Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq8416 403 4e-108 >seq8416 Length=35894 Score = 403 bits (446), Expect = 4e-108 Identities = 1072/1619 (66%), Gaps = 68/1619 (4%) Strand=Plus/Plus Query 178 ATCCAGCGGCCTGACCATACGACGCGCCCGATAATGTCGATTGCTTCCAAGTCTTGCTTA 237 ||||| | ||| | ||| || || || || | ||| || | | | || || || ||| Sbjct 255 ATCCAACCGCCCGCCCAAACAACACGTCCCACAATCTCTAGGTCATTCAGGTTTTCTTTA 314 Query 238 GACACGAACATTGTCTGATAGGCCGGATTAGCACTGATGATCGCCAGGCCGCCATTGATC 297 || || ||| |||||||| |||| || || ||||| | || | ||| || ||| Sbjct 315 GAAACCTTCATGGTCTGATAAGCCGCGTTTGCGCTGATAACTGCTACGCCACCGCCAATC 374 Query 298 TGCCGCTGGACGCGCTTGGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGCTTCG 357 || || || | ||||||||||||| |||||||||| ||| || ||||||| ||||| Sbjct 375 TGGCGTTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCTTCC 434 Query 358 TCA-CGAACCTCATTGCAACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAGTGG 416 | | | || |||| ||||||||| |||| ||| || |||||||| |||| || Sbjct 435 CCTTCCAGGCTG-TTGCGACTGTGGTCGATCAACACAGTGTCGCCATCACTCAGCACCCC 493 Query 417 CTCCATTGAGTCACCGCCGATGCGGACGGCCGACATATTCGCGATCTCCAGGCCTTGCTT 476 |||||| ||||||||| | | |||| ||||| | |||| ||||| || ||||| Sbjct 494 CTCCATAGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCCTGCTT 553 Query 477 CCGCAAGCTGTAGCGAGTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTCCAGGA 536 ||||| ||| || || |||| || | || | | | |||||||||||||| | Sbjct 554 GCGCAATGAGTAAGTGGTAAAAGCCAGGTGCGTAAGAACCCGAGCCCCCTCTGTCCATGC 613 Query 537 GCCGTGACCAGCGCTCACCCGAGCGTCATACAGAGGGATATAGGCGTAATTGTCGTCTCC 596 |||||||| || || |||||||| || || |||| |||| ||| ||||| || Sbjct 614 CCCGTGACCGGCACTGCAACGAGCGTCGTAAAGGGGGACATAGCTGTATTTGTCATC--- 670 Query 597 CTTCTCGCGACTATCTTCCGCAGGTATAGGGGTGC----CGAAAGCCAGCCACATAGCGG 652 ||| | || | ||||| | | ||| ||| |||| ||||||||||| || | Sbjct 671 ---CTC---AATAACAAGCGCAG-TCTGGGGCTGCTCACCGAACGCCAGCCACATCGCCG 723 Query 653 AAGTCCCTGCGGCCTGGGCGATCTGCTCAAGTCGATCCAAGGTTGGGAAAGTCTCCCCCG 712 | | || |||||||| |||||||| || | || | || || | ||||| || Sbjct 724 ACACATCAGCCGCCTGGGCAATCTGCTCCAGCCTGTCGAGAGTAGGATACGTCTCTCCGC 783 Query 713 ACAGATAACTGCGCAGGGTCGCCTCGGACAAGCCGCATTCCTTAGAAAATCCTCGCAA-G 771 |||||||||||| | | | |||| || | || | || | ||| | ||| | Sbjct 784 TCAGATAACTGCGTATAGCCCCCTCAGAAAGGCTTGAGTCGCGCGCAAAAACGCGCGCCG 843 Query 772 CTATGCGAGGAAATCGCCTGCTTCAGACGGATTTT---GAAGTATCCGATTCCATCCTGA 828 || | | ||||| | ||| || | ||| ||| |||||||| | || Sbjct 844 CTCTA-GTCCCCATCGCTTCCTTAAGTC---TTTCACGGAAACATCCGATTGCCCCCGAT 899 Query 829 GGAATCGGATGCCCAGACAATTCAG--TCGGTGCGCCATCCGTTTGTTCGTAACCCATTG 886 |||||||||||| | | || || || ||||| || | |||| ||||| Sbjct 900 GGAATCGGATGCTGCGTTCCTGAAGCATCCGTTTT--ATCCGATTCCTTGTAAGTCATTG 957 Query 887 ATTTTCCTAGT---ATTCATAGTTTTTCTGCGCACAGGTGCGAAGAAAAACTAAACGGAT 943 |||| || || |||||| ||||| | || | | || | ||||| || ||||| Sbjct 958 ATTTATCTCGTTCTATTCAT---TTTTCCGAGCGC-GCCACGCATAAAAAAGAATCGGAT 1013 Query 944 GAGTGGAAATCCG-TTGCTGTGCGAGGATTTTCTCGCTATGTTTATGCCCTAAGTCACGT 1002 | | |||| ||| | |||| | | | |||||||||||| | | | |||| Sbjct 1014 GCTCGTTTTTCCGATTGATATGCGCATTTATCCGCGCTATGTTTATCCGCAACAGGACGT 1073 Query 1003 TAGACACCCCaaaaaaaCCACCCTGCACGGTGGTTGAGATGGAACGTAGGCATGAACAGA 1062 ||||| |||||||||||||||| | | ||||| | | || |||| | Sbjct 1074 TAGACGTCCCAAAAAAACCACCCGTGAAGATGGTTCAAA----ACT-----ATGAGCGAT 1124 Query 1063 ACCGAAATACCCCGCGACAACAACGTCCGCTGGGAGTGGATCAAATACCAGCTCCGCGCC 1122 | ||| || ||| ||| | ||| |||||||||||||||||||| ||||||| Sbjct 1125 ATCGACATGCCCACTGACCCTACTAGCCGATGGGAGTGGATCAAATACCAACTCCGCGTA 1184 Query 1123 AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCCCTCGACGTATCCAGCCCGGCAGTCAAA 1182 |||| | || |||| || | || || || || || | | ||| || Sbjct 1185 CGGGGCACCTCAATGGCGAAGCTTGCTCGTCAGCTTGAGGTCACTGATCGCGCAATCCGC 1244 Query 1183 AACGCCAAGCTGAATCCCTACCCTCGGGTAGAGCGCGCCATCGCCGCTGTGCTCGACCTC 1242 |||||||| | |||||| || || | || || || | || | || || ||| Sbjct 1245 AACGCCAAAAGCACTCCCTATCCGCGCATCGAACGGTCCCTTGCTGATGCTCTGTGCCTT 1304 Query 1243 -AGCCCCCTGGTGCTGTGGCCTGAGCGCTGGCTCGACGACGAGAATCCGAAGCGGCAACG 1301 |||| | | | ||||| ||||||||| || ||| | | ||| | |||||||| Sbjct 1305 GAGCCTTCCGACA-TCTGGCCAGAGCGCTGGAACGCCGATGGCACTCCACACCGGCAACG 1363 Query 1302 GCCCAATCGTTCGGAAACCCTCAAGGCATATGACAGTGTCATATGCCGATCCGGGAAAAA 1361 ||| || |||||| || | | || ||| | ||| |||| | Sbjct 1364 GCCTGGGCGCGCGGAAATAAACACGTCCTACAACAAGG--ATA-------CCGG-----A 1409 Query 1362 TAACAGATACGCTGACCAAGCGCAGCGTAAAGCCGACGCGGGGGCTTGAACATGGCCCGC 1421 |||||| || | | || ||||||| | | | || |||||||| | Sbjct 1410 CAACAGA--CGGTT-----GGACACTGTAAAGCGGCAAGGAGTGCCTGAACATGCGTAAC 1462 Query 1422 CGCAAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCAGCTCGCGCTATACCC 1481 | ||||| ||| | || | ||||||||| |||||||||||| | | |||||||| Sbjct 1463 CAAAAAGATGACAGAACATTAGACATCTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCC 1522 Query 1482 GGTGAGTGCAACTACGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAATACTGAAGGCCGCC 1541 ||| | ||||||| |||||||||||||||||||||||||||||| | || || | || Sbjct 1523 GGTCACGGCAACTATGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCC 1582 Query 1542 AACCTCGACCGTTACGAGATTGCCGCCCGCATGTCGCGCCTCTCCGGCGATGACGTGAGC 1601 || | ||||| || |||||||| || |||||||| ||||| || ||||| ||||| ||| Sbjct 1583 GACTTGGACCGCTATGAGATTGCGGCTCGCATGTCACGCCTTTCGGGCGACGACGTTAGC 1642 Query 1602 AAGAACATGCTCGACGCCTGGTCGAGTCCCGCCCGAGTTGATCACAACTTGCCTTTCTAC 1661 ||||||||| | ||||||||||| ||||| ||||| | ||||||||| | ||| | || Sbjct 1643 AAGAACATGTTAGACGCCTGGTCAAGTCCTGCCCGTGCAGATCACAACCTACCTCTGTAT 1702 Query 1662 CGCGCCGCCCTCCTGGAAGACGTCTGCGCGAGCCACCTGCTGACCAACTGGCTGGTCGAT 1721 || || || | ||||| || ||||| || ||||| | ||||| || |||| || | Sbjct 1703 CGAGCTGCTTTGCTGGAGGAAGTCTGTGCAAGCCATGTCCTGACGAATTGGCAAGTACAC 1762 Query 1722 GTGCGGGGTGGCCGCGTGGCCTATGGCCGAGACGCACTGCTCGCCGAACTGGGCCGCCT 1780 |||| |||||||| || || ||||| || || || ||| ||| ||| | || ||||| Sbjct 1763 CTGCGCGGTGGCCGGGTCGCTTATGGGCGCGAGGCTCTGGACGCGGAAATAGGTCGCCT 1821 Score = 147 bits (162), Expect = 5e-31 Identities = 137/172 (80%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 8280 CGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCT 8337 |||||| |||| | || | |||| ||||||||||||||||| || | |||||||||| Sbjct 8662 CGGCCAGGAACAACTTGCCCTGCACTAAGCGAAACCGCCCCGGCGTG-CTGGGACGGTCT 8720 Query 8338 GCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAAACTAAGACGG 8397 |||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 8721 GCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAAC 8780 Query 8398 ACCGCCAGCGCCGCCTGGCGCGAGAACGCCAACGGGCGAAGCGCGAGCGCGA 8449 | ||||| ||||||||| || ||||| |||| || |||| ||||||| Sbjct 8781 AGCGCCAAACCCGCCTGGCACGCGAACGTAAACGTGCCCAGCGTAAGCGCGA 8832 Score = 113 bits (124), Expect = 1e-20 Identities = 314/473 (66%), Gaps = 29/473 (6%) Strand=Plus/Plus Query 2759 GCATGAAATCAAGGCACTGCGCCCGTTCATTCGCCGCGACTTCACCAAGCTACT---CCC 2815 ||| ||| |||| || |||| || |||| |||||| | ||||||| | ||| Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 2816 GACCGACGTCTATTCCTGCGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 2875 | |||||| | || ||||||||||| ||| || || ||||| | |||| | ||| Sbjct 2672 GTGCGACGTATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACGCA 2730 Query 2876 C-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTC 2934 | ||| ||| | ||| |||||| |||||| || |||| || ||| || || | Sbjct 2731 CCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAGGC 2788 Query 2935 CG--GGATGGTCCACCGGCTTGGCTGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGCGA 2992 || || |||| || ||| ||||| || | | || | || |||||||| || Sbjct 2789 CGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGTGA 2848 Query 2993 CGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACA 3051 |||| |||| || |||||| || | |||||||| |||||||| || |||| Sbjct 2849 CGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTTTG 2904 Query 3052 TCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGACATGA 3111 |||| ||| | || || | | ||| || | | ||| |||| |||| Sbjct 2905 CCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCACT---ATGA 2952 Query 3112 AAAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAGCC 3171 | | ||||||||||||||||||| || ||| | |||||||| |||||| | Sbjct 2953 CCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAACGA 3012 Query 3172 TGTGGATTCGGGCCGCCAAGGAACTGCCCGGATACATCGGCGCCGACATGGAC 3224 | ||| | || |||||| | ||| || | ||||||||||||||||||||| Sbjct 3013 TTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 100 bits (110), Expect = 7e-17 Identities = 219/322 (68%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 8696 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8755 || |||||||||||||||| | || || |||| ||||| ||||| ||||| ||| | Sbjct 9061 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTG 9120 Query 8756 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8815 | ||||| || | ||||| |||||||| || | ||| |||||| ||| ||| Sbjct 9121 GGCCGCGTGGCAGATGTGCGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTA 9180 Query 8816 CTGGTCGAACTCCAGCGCTTGGGCTGGAAAC---CGAAGAGCAATCGGCAAGGCCGGGCG 8872 |||| ||| || ||| |||||||| | | | ||| || |||||| | || Sbjct 9181 CTGGCCGAGTTCGCTCGCCTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCA 9238 Query 8873 ACGCCAAAAGTGCCG---CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCT 8928 | | || |||| || | | |||| | ||| | || || | ||||| || | || Sbjct 9239 AAG-CACCAGTGGCGGCTCCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCT 9296 Query 8929 GGCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGT 8988 || || | || ||||| ||| |||||| ||||||| |||||||||| |||| Sbjct 9297 CTCCGAGGCAAAGCGTTCCTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGT 9356 Query 8989 CGAGCGGGTCGAGTGGCTGGAC 9010 ||| || ||||| ||||| ||| Sbjct 9357 CGAACGCGTCGAATGGCTAGAC 9378 Score = 86.0 bits (94), Expect = 1e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 5678 TTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGCAGCCAGACGAAGGCCGGCGAGGCA 5737 ||||| | ||||| |||||||| || ||| ||||| | || |||||| | || Sbjct 5320 TTCGTGCGCTTGCTTGCCGCCGAAGTTGCCGCCAGCAATAAAACCAAGGCCAGTCAGCGC 5379 Query 5738 ATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGTCGCCCTCG 5797 |||||||||||||| | |||||||| ||||| |||||||||||| |||||| Sbjct 5380 ATCGGCATGAGCCGCACAGCCGTCAGCTTGATCCTGGCCAACCGCTACAGCTCGCCCAGC 5439 Query 5798 ACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTGAGCCGTATTGAGTGCCCGGCCTTG 5857 || |||||||||| || || ||| | ||| | || ||||| ||| || || Sbjct 5440 ACCTCTGGCGTCGAGCGTCGGGTAATGGAAACCCTGGGGCGAATTGAATGCATCGCACTG 5499 Query 5858 GGCGAGGCGGTGACCTCGGTCGAGTGC 5884 | |||| | | ||| | | | ||||| Sbjct 5500 GACGAGACCATCACCACCGACCAGTGC 5526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116396697417646