Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_020203.1 Length=37095 Score E Sequences producing significant alignments: (Bits) Value seq8416 302 1e-77 >seq8416 Length=35894 Score = 302 bits (334), Expect = 1e-77 Identities = 386/527 (73%), Gaps = 6/527 (1%) Strand=Plus/Plus Query 8553 ATGGAACCCAACAAAGCCCTGGAAAAAATCAAGAAACTGCTTCGCCTAGCAGGCAGCAGC 8612 ||||| | || |||||||||||| |||||||| |||||||| ||||| |||| ||| | Sbjct 8018 ATGGACCACACCAAAGCCCTGGACAAAATCAAAAAACTGCTGCGCCTGGCAGCCAGTGAC 8077 Query 8613 AACCCACACGAAGCGGCGGCCGCCATGCGCCAGGCGCGGGCGATGATGGAGAAACACGGC 8672 ||||| |||||||| || | || ||||||||||| || || ||||||| || || | Sbjct 8078 AACCCCCACGAAGCTGCCACTGCAATGCGCCAGGCCCGCGCCTTGATGGAAAAGTACCG- 8136 Query 8673 ATTGGC-GAGAGCGATATT--GCTCTGGCTGACGTCACCGAACACGGCACCGGTAGCGGC 8729 ||||| ||| || ||| ||||| |||| || ||| | | || |||| || Sbjct 8137 ATTGGAAGAGTCGGACATTCAGCTCT--CTGAGGTGTACGAGTGTGCCGCCCGTAGTGGT 8194 Query 8730 TCCAAACTGAAGCCCGCGCAGTGGGAAGCTAATCTCGGCGGCACCGTCGCGAAGGCATAC 8789 || || ||| || |||| |||||||| || || | ||| | || | |||| ||| Sbjct 8195 TCGAAGATGACCCCGCCGCAATGGGAAGCCAACCTGGTGGGCGCAGTTACACAGGCCTAC 8254 Query 8790 TCCTGCAAGCTGTTCTTCGCGGCTGGCATCGGCCAATGGCGCTTCGTGGGCGAAATGGCC 8849 ||||||| || | ||| ||| ||||||||| |||||||||| | |||||| ||||| Sbjct 8255 GCCTGCAAAGTGCTGTTCATGGCGGGCATCGGCGAATGGCGCTTTATCGGCGAACTGGCC 8314 Query 8850 GAGGTGGCCAGCTACACCATGGCGATCCTGCTGCGCCAGGTGCGCAAGGCCCGCCGCGAC 8909 ||| ||||||||||||||||||| | | ||||||||||| ||| || ||||||| ||| Sbjct 8315 GAGCTGGCCAGCTACACCATGGCCTTGTTACTGCGCCAGGTCCGCCAGTCCCGCCGTGAC 8374 Query 8910 TACATCGCCACCGAGCTTAAGCGCTGCAAGGCCTCCACCAAAACCAAGCGTGGCGACCTG 8969 | |||| ||| || | || ||||||||| | | ||||| |||||||| | ||| || Sbjct 8375 TTCATCAGCACTCAGTTGAAACGCTGCAAGCCTGCGACCAAGACCAAGCGCGCTGACGTG 8434 Query 8970 TTCTGCGACGCCTGGGTGTGGTCGGTGCGTAAGCAGGTCAATCAGTTCGCCGGGAGTGCG 9029 ||||| | || ||||||| | ||||||| |||| |||| ||| || || | | Sbjct 8435 TTCTGTGGTGCTTGGGTGTCGGCGGTGCGCCAGCAAGTCATGGCGTTTGCTGGCAACGAT 8494 Query 9030 CAGCCGTCGCTGGCAGCCGAGGCGTACATGGTGAAGCACCACCCCGA 9076 | || || | |||| | | |||||||||| | |||||||| |||| Sbjct 8495 GAACCATCACCGGCAACAGCGGCGTACATGCTCAAGCACCATTCCGA 8541 Score = 264 bits (292), Expect = 3e-66 Identities = 265/344 (77%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 1471 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCAGCTCGCGCTATACCCGGT 1530 ||||| ||| | || | ||||||||| |||||||||||| | | ||||||||||| Sbjct 1466 AAAGATGACAGAACATTAGACATCTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGT 1525 Query 1531 GAGTGCAACTACGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAATTCTGAAGGCTTGCGAC 1590 | ||||||| |||||||||||||||||||||||||||||| | || || | | |||| Sbjct 1526 CACGGCAACTATGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGAC 1585 Query 1591 CTTGACCGTTACGAGGTCGCCGCCCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAG 1650 | ||||| || ||| | || || |||||||| ||||| || ||||| ||||| |||||| Sbjct 1586 TTGGACCGCTATGAGATTGCGGCTCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAG 1645 Query 1651 AACATGCTCGACGCCTGGTCGAGTCCCGCCCGAGCTGATCACAACCTGCCTTTCTACCGC 1710 |||||| | ||||||||||| ||||| ||||| || ||||||||||| ||| | || || Sbjct 1646 AACATGTTAGACGCCTGGTCAAGTCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGA 1705 Query 1711 GCCGCCCTCCTGGAGGACGTCTGCGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTG 1770 || || | |||||||| ||||| || ||||| | ||||| || |||| || | || Sbjct 1706 GCTGCTTTGCTGGAGGAAGTCTGTGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTG 1765 Query 1771 CGGGGCGGCCGCGTGGCCTATGGCCGAGACGCACTGCTCGCCGA 1814 || || ||||| || || ||||| || || || ||| ||| || Sbjct 1766 CGCGGTGGCCGGGTCGCTTATGGGCGCGAGGCTCTGGACGCGGA 1809 Score = 122 bits (134), Expect = 2e-23 Identities = 316/473 (67%), Gaps = 29/473 (6%) Strand=Plus/Plus Query 3027 GCATGAAATCAAGGCACTGCGCCCGTTCATTCGCCGCGACTTCACCAAGC---TGCTCCC 3083 ||| ||| |||| || |||| || |||| |||||| | ||||||| || ||| Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 3084 GACCGACGTCTATTCCTGCGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 3143 | |||||| | || ||||||||||| ||| || || ||||| | |||| | ||| Sbjct 2672 GTGCGACGTATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACGCA 2730 Query 3144 -CGGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTC 3202 |||| ||| | ||| |||||| |||||| || |||| || ||| || || | Sbjct 2731 CCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCG--CAAGGC 2788 Query 3203 C--GGGATGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTTGTCGATGCCCTGCGCGA 3260 | ||| |||| || ||||||||| || | | ||| | || |||||||| || Sbjct 2789 CGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGTGA 2848 Query 3261 CGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCAGGCTACA 3319 |||| |||| || |||||| || | |||||||| |||||||| || |||| Sbjct 2849 CGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTTTG 2904 Query 3320 TAAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGACATGA 3379 ||| ||| | || || | |||| || | | ||| |||| |||| Sbjct 2905 CCAACGACACCGTACG---TGAAGTAGTCGACCGTCTCGGC------GGCA---CTATGA 2952 Query 3380 AAAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAGCC 3439 | | ||||||||||||||||||| || ||| | |||||||| |||||| | Sbjct 2953 CCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAACGA 3012 Query 3440 TGTGGATTCGGGCCGCCAAGGAACTGCCCGGATACATCGGCGCCGACATGGAC 3492 | ||| | || |||||| | ||| || | ||||||||||||||||||||| Sbjct 3013 TTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 109 bits (120), Expect = 1e-19 Identities = 221/322 (69%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 9556 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9615 || ||||||||||||||| | || || |||| ||||| ||||| ||||| ||| | Sbjct 9061 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTG 9120 Query 9616 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9675 | ||||| || | ||||| |||||||| || || ||| |||||||||| | ||| Sbjct 9121 GGCCGCGTGGCAGATGTGCGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTA 9180 Query 9676 CTTGTCGAACTCCAGCGCCTGGGCTGGAAAC---CGAAGAGCAACCGGCAGGGCCGGGCG 9732 || | ||| || |||||||||||| | | | ||| || ||| || | || Sbjct 9181 CTGGCCGAGTTCGCTCGCCTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCA 9238 Query 9733 ACGCCAAAAGTGCCG---CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCT 9788 | | || |||| || | | |||| | ||| | || || | ||||| || | || Sbjct 9239 AAG-CACCAGTGGCGGCTCCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCT 9296 Query 9789 GGCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGT 9848 || || | || ||||| ||| |||||| |||||||| |||||||||| |||| Sbjct 9297 CTCCGAGGCAAAGCGTTCCTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGT 9356 Query 9849 CGAGCGGGTCGAGTGGCTGGAC 9870 ||| || ||||| ||||| ||| Sbjct 9357 CGAACGCGTCGAATGGCTAGAC 9378 Score = 100 bits (110), Expect = 7e-17 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 8472 CACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8531 |||| ||||||||||||||||| || | |||||||||||||||||||||| ||||||||| Sbjct 8684 CACTAAGCGAAACCGCCCCGGCGTG-CTGGGACGGTCTGCCGGACGTGGTTGTCCGGTAC 8742 Query 8532 TGACGAGCAGCC 8543 ||| |||||||| Sbjct 8743 TGATGAGCAGCC 8754 Score = 86.0 bits (94), Expect = 1e-12 Identities = 395/614 (64%), Gaps = 26/614 (4%) Strand=Plus/Plus Query 5946 TTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGCAGCCAGACGAAGGCCGGCGAAGCA 6005 ||||| | ||||| |||||||| || ||| ||||| | || |||||| | | Sbjct 5320 TTCGTGCGCTTGCTTGCCGCCGAAGTTGCCGCCAGCAATAAAACCAAGGCCAGTCAGCGC 5379 Query 6006 ATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGTCGCCCTCG 6065 |||||||||||||| | |||||||| ||||| |||||||||||| |||||| Sbjct 5380 ATCGGCATGAGCCGCACAGCCGTCAGCTTGATCCTGGCCAACCGCTACAGCTCGCCCAGC 5439 Query 6066 ACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTGAGCCGTATTGAGTGCCCGGCCTTG 6125 || |||||||||| || || ||| | ||| | || ||||| ||| || || Sbjct 5440 ACCTCTGGCGTCGAGCGTCGGGTAATGGAAACCCTGGGGCGAATTGAATGCATCGCACTG 5499 Query 6126 GGCGAGGCGGTGACCTCGGTCGAGTGC---AGCGAGTACCTCCAGCGGCCGGCGCCGCTG 6182 | |||| | | ||| | | | ||||| ||| |||| | | || || ||| Sbjct 5500 GACGAGACCATCACCACCGACCAGTGCCAAAGC---TACCGCGAAAAACCCGCACCGACC 5556 Query 6183 AACAACCCCGTCGCGATGCGCTGCTGGAAAGCGTGCCGCGCCTGCCCACGCAA-CCCGCA 6241 ||||||| ||||||| |||| || |||| ||||||| ||| |||| Sbjct 5557 CACAACCCGCAGGCGATGCAGCACTGGCGCGCCTGCCAACACTGCCCAATCAACCCCGAC 5616 Query 6242 TACCGCCCCCATGA-AACG-AGAGGAACAAGGCCATGAGAACCGCATTGCCCTTGAAAGT 6299 | | || ||| || |||| | | | ||| || ||| | | || |||||||| Sbjct 5617 TGCTGCAACCAGGAGAACGCTCATGCTCGCCTCCACTAG--CCGTAAT-CCGTTGAAAGT 5673 Query 6300 GTTGACGCCTGACTTGGCCCAGAGCCTGCGCACCTTCAACGATGCCGCCCGGCTGCTCCA 6359 |||| || ||||| | | ||||||| ||||||| |||||||| | || Sbjct 5674 CCTGACTCCGTCGCTGGCCGACCGTCTGCGCATTTTCAACGCCGCCGCCCGCAACTTGCA 5733 Query 6360 GCGCATGGGGGTTCGCCTTCATCGTCTGGAGCCGACAGAGGGGCG---CGTGACCATCGC 6416 | | ||| ||||| | || | | | ||| | || || |||| || ||| Sbjct 5734 GGCCCACGGGATTCGCGTGCAGGGCTTTCATCCGGCTGATAACCGATTGGTGATCA-CGC 5792 Query 6417 CGCAGATGACGCCCGCCAGCTCCTGGAGAA---AGGCTAC-CTGATGGGCTTCCAGCGCG 6472 || || ||| | |||| ||| || ||| || | || ||||| || ||| Sbjct 5793 CG-----GAAGCCGGTCAGCGGCTGATCAACCTTGGCCACACCGA-GGGCTATCAACGCC 5846 Query 6473 ACGCCTCGGCCGGCAGCACCCGTTACATCACCCGCTTCCAGGGCATCACCCTGGCCTGGA 6532 ||| | ||||||| |||||||||| || | | ||||||||| | ||||||| ||| Sbjct 5847 ACGGCACGGCCGGTAGCACCCGTTTCAACGTGCAGTTCCAGGGCGTGACCCTGGAATGGC 5906 Query 6533 GCGAACCGATCAGC 6546 ||||||| || ||| Sbjct 5907 GCGAACCCATTAGC 5920 Score = 80.6 bits (88), Expect = 6e-11 Identities = 75/94 (80%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 8466 ACCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTC 8525 ||| | || | |||||||||| ||||| | |||||| |||||||| | |||||| | | Sbjct 7511 ACCCTTCAATAAGCGAAACCGTCCCGGT-TATCCGGGATGGTCTGCCAGGCGTGGTTGCC 7569 Query 8526 CGGTACTGACGAGCAGCCGAGGAATACATGGAAC 8559 |||||||| |||||||||||||| ||||||| Sbjct 7570 TGGTACTGATGAGCAGCCGAGGAAACGATGGAAC 7603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118526899953442