Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5074 158 6e-34 >seq5074 Length=2057 Score = 158 bits (174), Expect = 6e-34 Identities = 424/631 (67%), Gaps = 32/631 (5%) Strand=Plus/Minus Query 25928 TTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCT 25987 ||||| || || | ||| |||||||| | |||| | ||||||||||| | || || ||| Sbjct 669 TTCTC-ATGAAAATATCGGGAATCCAAAGTGCAAAGAATAAATCTCTTGTTCGCAGTTCA 611 Query 25988 TCTTTTCCGTGATTCTTTTTTAGATCT-AAGAAATCAAA-AATATCTGAGTGCCATGGTT 26045 || ||| ||||| ||| | | || ||||| | ||| |||| ||||| |||| Sbjct 610 TCAGCTCCTTGATTTTTTCTCA--TCGGAAGAATACTTCTAATGTCTGGATGCCAAGGTT 553 Query 26046 CTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAG 26105 | | ||| || | ||| || || | ||| || |||||||||||||| ||| |||| | Sbjct 552 CGAGATAAATGCTGATACTTCCCTTACGTTTGCCCCCACCTTGATCTACATATTTTGCTG 493 Query 26106 TTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAA 26165 | | | |||||||||||| ||||| |||||| | |||| ||||| || | | || Sbjct 492 TAGATTCTATAACTTTCAACATAGGAACCAATCCATTGGAAATGCCGTTGGTTCCTTTAA 433 Query 26166 T-CTTGGATCCTGTCGATCTAA-TATCGTGAGCATGAATACCGATTCCACCAGCCCATTT 26223 | | | || || | ||||||| | || | | ||| | |||||| ||||| || |||| Sbjct 432 TACCTTGA-CCGGAAGATCTAACTTTCATCA-CATCGAGACCGATACCACCTGCATATTT 375 Query 26224 TGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||||| ||||| | || |||||||| ||||| | ||| ||| | | | Sbjct 374 CGAAATCATCGCACAGTTCTTTACCGTATCGAAGATTCCGTCAATGGAATCTTCCCTGA- 316 Query 26284 TCCTAATAA-AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCG 26342 | || ||| ||||||| ||| | || | | |||| || | ||| |||| || | Sbjct 315 TAGTAGTAAGAAAACAACTAGACATCTGGGGTAAATTTGTACCCGCATTGAATAGAGTAG 256 Query 26343 GTGTAGCATGAGTATAATATCC--TTCAC-TCAAAGCTGTATAAGTTTCAAGAACTTCAT 26399 ||||||||||| || ||||||| | || |||| | ||| ||||| ||||| |||| Sbjct 255 GTGTAGCATGAATAAAATATCCCATAGACATCAA---TCGATATGTTTCGAGAACATCAT 199 Query 26400 CGATATTGTAATTACTAACT-TCA-AT----------AGCTGTTCTTAACCACATATATT 26447 ||| | | | || || ||| || || || || ||||||||| Sbjct 198 TAATACTTTCGGGATTATCTGTCAGATGAATCCCGCAAGAGACTCGCAAATACATATATT 139 Query 26448 GAGGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTT 26507 | ||| |||||||| | ||| | | || || | |||||| ||||| ||| | Sbjct 138 GTGGTGTTTCAATTA---TCTTTCTATCTTTTCGAAGTAGATAAGAACGTTCTAGAGTCT 82 Query 26508 TCAATCCAAAATAATCATGATTGAAATCTCT 26538 | ||||| |||||||| |||| |||||||| Sbjct 81 TAAATCCGAAATAATCGAGATTCAAATCTCT 51 Score = 82.4 bits (90), Expect = 4e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 ||||||||| || || ||||| | | ||| || ||||| | ||||| |||||||| Sbjct 1541 AAATTCTCCCGATAATACTCTACGAAGATATACATTAGAAGTATAAGGTTCGAAACATTC 1482 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATA 25127 |||||||| | ||| ||||||||||||||| |||||| ||| || |||| Sbjct 1481 GTTATTTCCCAGGATAATAGAAGTAGATGCTGTGGGCATTGGTGCGATCAATA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252918453263975