Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq12390 179 1e-40 >seq12390 Length=60018 Score = 179 bits (198), Expect = 1e-40 Identities = 149/182 (82%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 2407 TGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTG 2466 ||||||||||| ||||| | ||||||| ||||| || ||||||||||| ||||| ||| Sbjct 52158 TGGTCGTAGTAGTACTTCGCCGACTTGCTCAGCAAAAAAATGTACTCGTGGGCCTTAGTG 52217 Query 2467 CAGCGGTCGCGCACGCTCTCCGGCATTGGGTTTGGCTTGTGCCAGATAATATCCTGACGC 2526 ||||||||||| || |||||||||||||| |||||||| ||||| || || || || ||| Sbjct 52218 CAGCGGTCGCGGACACTCTCCGGCATTGGATTTGGCTTATGCCAAATGATGTCTTGGCGC 52277 Query 2527 AGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGTCT 2586 || |||||||| ||| | |||||||| || || | ||||||||| || || || | ||| Sbjct 52278 AGATACCAGCCATCGTCCTGCAGGGCAAAGGCCAAGCGCCAGGGCATTCCCATCATGTCC 52337 Query 2587 TT 2588 || Sbjct 52338 TT 52339 Score = 100 bits (110), Expect = 7e-17 Identities = 169/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 2703 GCTGGCATAGCTGTCCCCAAGATTCAACCAAACTGTCCCGTCGTCACGCAGCACCCTGCG 2762 || ||||||||| || || | ||||| ||| | || || ||||| || || || | ||| Sbjct 52490 GCCGGCATAGCTATCACCCATATTCACCCAGGCCGTACCATCGTCGCGGAGTACTCGGCG 52549 Query 2763 CACCTCGCGGAACACGCGCACCA-GCGCTTCCACGAACTCATCCGGTGACGCTTCAAGGC 2821 ||||||||||||||| |||| |||| | | |||||| |||| | | || |||| Sbjct 52550 CACCTCGCGGAACACTTCGACCAGGCGC-CCGATGAACTCGGCCGGCGTTTCCTCCAGGC 52608 Query 2822 CGAGCTGGCCGTATTGCCCGTAGTCGCGCAGGCCGAAGTACGGCGGGGATGTGACGCAAC 2881 | | |||||| | ||||| || ||||||||| |||| |||||| || ||||| Sbjct 52609 CTATCTGGCCCTCCACGCCGTAATCCCGCAGGCCGTAGTAGGGCGGGCTGGTCACGCACA 52668 Query 2882 AATTAACGGACTTATCATCCATACCGTC--CATAGATTCAAGGCAGTCCCCTATTAGAAC 2939 | ||| ||||| || | | |||| ||| || |||| |||||| || || | ||| Sbjct 52669 TCTGAACTGACTTGTCTGGC--AGCGTCCGCATCGACTCAATGCAGTCGCCGATCAAAAC 52726 Score = 80.6 bits (88), Expect = 7e-11 Identities = 112/155 (72%), Gaps = 18/155 (12%) Strand=Plus/Plus Query 2131 GCCGTTGTTCCGCTGCCGCCGAACGGGTCCAGGACTGTGCCGTTTTCCG---GGCAC-CC 2186 ||||| || ||| |||||||| ||||| || || ||||| ||| ||| | || Sbjct 51762 GCCGTCGTACCGGCACCGCCGAAAGGGTCAAGCACGATGCCG----CCGAGTGGCGCGCC 51817 Query 2187 AGCCAGGATGCACGGCTCAATCAGATCTGGCGGGAAGGTAGCGAAGTGGGCGCCCTTGTA 2246 ||||||| ||| || |||||| || ||||||||||| |||||||| ||||||||| | Sbjct 51818 GGCCAGGACGCATGGGCGAATCAGGTCAGGCGGGAAGGTGGCGAAGTGTGCGCCCTTGAA 51877 Query 2247 -----GGGTCGGCTGTTGACGGTCCAGACGCTGCG 2276 | |||||| || ||||| |||||||| Sbjct 51878 ACTGTGCGTCGGC-----ACAGTCCATACGCTGCG 51907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130041508255042