Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2393 185 1e-41 seq29849 150 2e-31 seq1662 123 3e-23 >seq2393 Length=4323 Score = 185 bits (204), Expect = 1e-41 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| |||||||||||||| |||||||| || ||||||||||| ||||| |||||| Sbjct 1126 AGAATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACTATCACCCTTGAGGTGGAGTCG 1067 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || || ||||| || | || | |||||||| || ||||| || || || || || Sbjct 1066 AATGATACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGGAC 1007 Query 171979 CAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTAC 172038 ||||||||||| || ||||| || || ||| | |||||||| | || || ||||| ||| Sbjct 1006 CAGCAACGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACTAC 947 Query 172039 AACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 ||| | || ||||||||||| || ||||| ||||| | || || || |||| Sbjct 946 AACATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTGCGCGGAGGTG 895 Score = 152 bits (168), Expect = 7e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || || ||||| || || ||||| |||||| Sbjct 2155 ATGCAGATCTTCGTTAAGACTCTCACAGGCAAGACTATTACTCTTGAGGTGGAGTCGAAT 2096 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || | |||||||| || ||||| || || || || || ||| Sbjct 2095 GATACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGGACCAG 2036 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 |||||||| || ||||| || || ||| | |||||||| | || || ||||| |||||| Sbjct 2035 CAACGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACTACAAC 1976 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || ||||||||||| || ||||| ||||| | || || || |||| Sbjct 1975 ATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTGCGCGGAGGTG 1927 >seq29849 Length=3363 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| |||||||| || || || || || || ||||| ||||| || ||||| Sbjct 1272 ATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACTCTCGAAGTCGAGTCCAAC 1213 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || | ||||| || || ||||||||||| || || || ||| Sbjct 1212 GACACGATTGAGAACGTGAAGTCGAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1153 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || || || || || || || || || || || ||||| || || |||||| Sbjct 1152 CAGCGATTGATCTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCCTTGCCGACTACAAC 1093 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||||||||||| || || |||||||| || | || | |||||| Sbjct 1092 ATTCAAAAGGAGTCGACCCTCCACCTTGTGCTGCGACTCAGAGGTGGT 1045 >seq1662 Length=13521 Score = 123 bits (136), Expect = 3e-23 Identities = 235/342 (69%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 195651 TGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATG 195710 || ||||| ||| ||||||| || || || | || | || |||| |||||| | | Sbjct 8969 TGCTGTTGCAGAAGCTGAAGGAAACAGCTGAGGCATTTGTAGGCAAAAAGGTGAAAAAGG 9028 Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAG-GCGACAAAGGACGCT 195769 | || | || || ||||| ||||| | ||| || ||| | || ||||| || Sbjct 9029 CGGTCATTACAGTTCCTGCCTACTTTAACGATGGCCAGCGAGAACGCACCAAAG----CT 9084 Query 195770 GCTG-CTA--TTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 |||| | | | || || || | ||| | | ||||| ||||||||||| || ||| Sbjct 9085 GCTGGCGAAGTCGCCGGGCTGCAGGTTCTGCGTGTCATCAACGAACCAACAGCCGCAGCA 9144 Query 195827 ATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 | || || |||||||| ||||| || ||||| || ||||||||| | || || || Sbjct 9145 TTGGCATACGGTCTGGATAAGAAGAATGACGACGAAGTCAATGTATTGGTTTTCGACCTT 9204 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||||||||| ||||| || || || || |||||| || || |||||||| || Sbjct 9205 GGTGGTGGTACTTTTGACGTTACAGTTGTCGGTATTGACAACGGCATTTTCGAAGTGAAA 9264 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 | || || || || || || || ||||| |||| |||||| Sbjct 9265 TCAACAGCCGGAGACACGCACCTTGGTGGACAAGACTTCGAT 9306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657538295865360