Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq24902 154 5e-33 >seq24902 Length=16590 Score = 154 bits (170), Expect = 5e-33 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 2038 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 2097 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || | | |||||||||||||||||||||||| | || ||||| |||||||| || Sbjct 2098 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 2157 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | || || || || ||||| ||| |||||||| || ||||| |||| || Sbjct 2158 GGCACCCGATCCACGGCCTGGGCCCACCGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 2217 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 |||| |||| |||||||| ||||| ||||||||||| || || || | |||| Sbjct 2218 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 2275 Score = 113 bits (124), Expect = 1e-20 Identities = 227/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Plus Query 39639 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39698 ||||||||| || || |||||||| | |||||||||||| || |||| | | || Sbjct 902 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 961 Query 39699 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39758 || || || || ||||| | ||||||||| |||| || |||||| ||| || ||| Sbjct 962 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 1021 Query 39759 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39811 | | | ||| || |||| || || | | | | |||| ||||| Sbjct 1022 AAGATGTTACCGGCCAGGTCGGCATCGAT---GTTG--TTGGTGGCGCAA--CCTTCAAT 1074 Query 39812 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39871 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 1075 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 1134 Query 39872 CAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTC 39931 || ||| || |||||||| || |||||||||||||| |||| || | ||| || || Sbjct 1135 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 1194 Query 39932 CTGGTAGATGATGAGCTGGAAGGTCGGGTCCAG 39964 || || | ||||| | ||||||| |||| Sbjct 1195 TTGATACAGGATGATGCCGTAGGTCGGTGCCAG 1227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164767647791284