Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq36294 138 3e-28 seq8869 100 8e-17 seq39020 84.2 6e-12 >seq36294 Length=49020 Score = 138 bits (152), Expect = 3e-28 Identities = 193/268 (72%), Gaps = 12/268 (4%) Strand=Plus/Minus Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506 |||| ||||| |||||||||||||| ||| | ||||||||||||||||| ||| | Sbjct 39186 TGTCGACCACGATTTCGGTGGTGTAACGCTTGAT---GCCGTCTTTTTCCCACTCGCGGG 39130 Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 | ||||||||||| ||| | | || |||||||| || || ||||| |||| Sbjct 39129 TTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCT 39070 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTT---CCTTGCGCTCGC 23623 | || ||||||||||| | | || |||||||||||||| || | |||| || || Sbjct 39069 CTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT---CTGGC 39013 Query 23624 CGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGC 23683 |||| |||||||| |||| || || ||||| || | |||| ||||||| | Sbjct 39012 CGGTTTGCTTGTCGGTCCACTGCTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCATTAC 38953 Query 23684 CGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||| ||| |||||| ||||| || || Sbjct 38952 CGTTCGGCAAGTAGCGAACTTCGGGATC 38925 >seq8869 Length=13117 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||| ||||||||| |||| | ||||||||||||| |||||||||| Sbjct 12773 ATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 12714 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 12713 CAGCTGAGCTACGGG 12699 >seq39020 Length=23788 Score = 84.2 bits (92), Expect = 6e-12 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 |||||||||||||||||||||||| ||| || | || ||| | ||||||||||||||||| Sbjct 16788 CGACAGGATTCGAACCTGTGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCT 16847 Query 21132 ACG-GGGCCGATT 21143 ||| | || |||| Sbjct 16848 ACGAGTGCAGATT 16860 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 |||||||||||||||||||||||| ||| || | || ||| | ||||||||||||||||| Sbjct 16937 CGACAGGATTCGAACCTGTGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCT 16996 Query 21132 ACG 21134 ||| Sbjct 16997 ACG 16999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139218011370956