Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq36294 118 3e-22 seq21847 80.6 8e-11 >seq36294 Length=49020 Score = 118 bits (130), Expect = 3e-22 Identities = 228/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | || ||||| || ||||||||||| | ||| || || ||||| || | Sbjct 39214 CCGCCCAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCT-- 39157 Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCT 30173 ||| ||||| | || |||| || ||| || || |||| ||| | ||| Sbjct 39156 TGATGCCGTCTTTTTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCG 39100 Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233 ||| || | || | ||| ||||||| || | ||| ||||| | | ||| |||| Sbjct 39099 AACCTTTGCGCAGGTATTCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGT 39040 Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293 |||||||||| ||| | ||||||||| |||||||| |||| ||||||||| | Sbjct 39039 GCCATTCGGTTTTCTCGACCTTCTGGCCGGTTTGCTTGTCGGTCCACTGCTCGCTGGTCG 38980 Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCAC 30353 | || | | ||||||||| ||||| ||||| |||| |||||| ||| || || | Sbjct 38979 CCAGACTCAGGTTGGTCACGGCATTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGC 38920 Query 30354 CGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 || | || |||| |||||||||||||| || Sbjct 38919 CGCATGTACCGACCAATATGACTTTGTTAACCCC 38886 >seq21847 Length=54027 Score = 80.6 bits (88), Expect = 8e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 33217 ATCCTGCAAGCGCTCGACCCGGACGCTGACGATCTCCAGCAGGATGCGGGAGGCCCAGCG 33276 |||||||| |||||||| ||||| | ||||||||||||||||||| | |||||||| Sbjct 1258 ATCCTGCAGCCGCTCGACGCGGACATCGGTGATCTCCAGCAGGATGCGGCATGCCCAGCG 1199 Query 33277 GGGCATGTGGATACTTGGCTTCCA 33300 ||||| ||||| |||||||| Sbjct 1198 CGGCATATGGATCGACGGCTTCCA 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145570236950672