Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02]
39,413 sequences; 107,915,492 total letters
Query= NC_023700.1
Length=34553
Score E
Sequences producing significant alignments: (Bits) Value
seq8416 403 4e-108
seq8567 154 3e-33
>seq8416
Length=35894
Score = 403 bits (446), Expect = 4e-108
Identities = 898/1335 (67%), Gaps = 27/1335 (2%)
Strand=Plus/Plus
Query 17753 GACCGCAACACCCCGCTCCAGGACGCCGAGGTCATCGGCGTGCCGGTAGCGGCCAACGTC 17812
|| ||||| || || | ||| | ||||||| | | || || || || |||||||||
Sbjct 21216 GATCGCAATACGCCCATGAAGGCCACCGAGGTTCTGGTGGTTCCCGTTGCCGCCAACGTC 21275
Query 17813 CAGGTCTTCGCCGGCGCCATCGTCGTGGCGAACGCTACCGGGTTCGCCGTGGGCGGCAGC 17872
| ||||||| ||| | | || || || ||||| || || || || | ||
Sbjct 21276 CGCATCTTCGCGGGCTCTCTGGTAGTCGCTAACGCCACTGGTTTTGCTGCACCTGGTTCA 21335
Query 17873 ACCGCCACCGGCCTGACCTACCTGGGCCGCGCTGAGGAATACGTGGACAACCGCAATGGC 17932
|||||| |||||| ||||||| ||||| || || || | || |||||||| |||
Sbjct 21336 ACCGCCCTGGGCCTGTCCTACCTCGGCCGTGCCGAAGAGTCAGTCGACAACCGTGGCGGC 21395
Query 17933 GCGGATGGCGCCAAGGTC--GTCCGTGTGCGCCGCC-TG--AACGCCTTCAAGTGGGCGA 17987
|| | ||| || | || ||| | | ||||| || || || ||| ||| | |
Sbjct 21396 GCAGCTGGTGCT--GCTCAGGTC---GAGATCCGCCATGGCAAGGCATTCCTCTGGACCA 21450
Query 17988 ACGACGGCAGCGTCACCCAGGCGCACCTGATGAAACCCGCCTACATCGTGGACGACCAGA 18047
| ||||||| | ||||||||||| ||||| | || ||||| |||||||| || ||| | |
Sbjct 21451 ATGACGGCACCATCACCCAGGCGTACCTGTTCAAGCCCGCTTACATCGTCGATGACGAAA 21510
Query 18048 CCGTCGCCGCCACGGACGGCACCGAAACCCGCTCCCCGGCCGGCCGCATCATCGGCGTCG 18107
|||| || || | || | || ||||| ||| | || || |||||| |||| | |
Sbjct 21511 CCGTAGCGGCTGCTGATGCAGGCGGCACCCGATCCACTGCTGGACGCATCGTCGGTATTG 21570
Query 18108 AACCGGACGGCGTGTGGGTGGAATAACAGGCTCACCAAC--GGAGAACCGGACACATGCT 18165
| | ||||||||||||| || |||| ||| | |||| | | |||| |
Sbjct 21571 ATACCAACGGCGTGTGGGTTGAGTAACTCCCTCTATATATAGGAGCGCATTGCGCATGTT 21630
Query 18166 GATCAACAAGCAGAGTCTCAACGCGGCATTCGTCGCGATCAAAACCATCTTCAACAACGC 18225
| |||||| || | || ||||| || || | |||||| | |||||||||||
Sbjct 21631 AGTTAACAAGTCCTCGATCCAGGCAGCATTTGTTGCCCTGAAAACCCTTTTCAACAACGC 21690
Query 18226 CTTCGCGGCGGCCCCCACCACCTGGCAGAAGATCGCCATGGAAGTGCCGAGCAACACCAG 18285
||| ||| | || |||| | ||||| | |||||||||||| | ||||| |||| ||| |
Sbjct 21691 CTTTGCGACCGCACCCAGCGCCTGGGAAAAGATCGCCATGAAGGTGCCAAGCACCACTGG 21750
Query 18286 CAGCAACGATTACAAGTGGTTGAGCACCTTTCCGAAGATGCGCCGCTGGATCGGCGCGAA 18345
| |||| || |||| || | ||||| || |||||||| ||| | |||| ||
Sbjct 21751 CGCCAACATGTATGCGTGGCTGTCGGCGTTTCCAAAAATGCGCCGTTGGGTTGGCGAAAA 21810
Query 18346 GGTGGTCAAGAACCTGAAAGCCTACAAGTACGTTGTCGAGAACGAGGACTTCGAGGCCAC 18405
| || |||| ||| || || | || ||| || || ||||| || || || || ||
Sbjct 21811 GCACGTTAAGAGCCTCAAGGCGTTCAGCTACACCGTAGAAAACGAAGATTTTGAAGCGAC 21870
Query 18406 CGTCGAGGTGGACCGCAACGACATCGAGGACGACCAAATCGGCATCTACTCGCCCCAGGC 18465
||||| || ||||||||| | ||||| ||||| || | ||||| || ||||||||||
Sbjct 21871 TGTCGAAGTTGACCGCAACCATATCGAAGACGATCAGTTGGGCATTTATGCGCCCCAGGC 21930
Query 18466 GAAGATGGCCGGTTACTCGGCGGCTCAGCTCCCGGACGAGCTGGTCTATGAAGCGGTCAA 18525
| | ||||| || | ||| || ||| | ||||| || | || | || ||| ||
Sbjct 21931 GCAAATGGCAGGCTTCTCAGCAAAGCAGTTGCCGGATGAAATCGTATTCGAGTTGGTGAA 21990
Query 18526 CGGCGCCTTCACCAAGCCCTGTTTCGACGGCCAGTATTTCATCGACACGGATCACCCTGT 18585
||||| || ||| | || | |||||||||||| ||| ||||||| || ||| ||
Sbjct 21991 CGGCGGTTTTGGCAACCTGTGCTACGACGGCCAGTACTTCTTCGACACCGACCACGTCGT 22050
Query 18586 CGGTGATGCCTCGGTGAGCAACAAGGGCACCGCTCCGCTTTCCAACGCCAGCCAGGCGGC 18645
||| || || |||||||| ||||| || ||||||||| | | ||||||||
Sbjct 22051 CGGCACTGGTAGCGTCAGCAACAAAGGCACGGCGGCGCTTTCCATTACGACTCAGGCGGC 22110
Query 18646 GGCGAAGGCAGGTTATGGCGCTGCTCGCACTGCGATGAAGAAGTTCAAAGACGAGGAAGG 18705
|| |||| | |||||||| || ||||| || ||| |||||||| ||||| || ||
Sbjct 22111 AGCCAAGGGCAGCTATGGCGCAGCACGCACCGCCATGGGCAAGTTCAAGGACGATGATGG 22170
Query 18706 ACGTTCCCTCAACGTCTCCCCCAAC-GTGCTCCTGGTCGGCCCGGCGCTGGAAGACGTGG 18764
||| | || | || | |||||| | |||||||||||||| | |||||||| |
Sbjct 22171 CCGTCCTCTGGATGT-GCGCCCAACAATCCTCCTGGTCGGCCCAGGTTTGGAAGACACCG 22229
Query 18765 CGAAGATGCTGCTCACCAACCCGAAGCTCGCGGACAACACCCCGAACCCCTACGTCGGCA 18824
| || | |||| || | ||| || |||| |||| || |
Sbjct 22230 CCCGCGCCTTGTTGACCAGTGATCGCCTGGAAGACGGCAAGGTCAACCTCTACAAGGGTA 22289
Query 18825 CTGCTGAGCTGGTAG--TGGACGGGCGTATCGAGTCCGACACCGCCTGGTTCCTGCTGGA 18882
|||| ||| |||| | | ||| |||||| ||||| || ||||||||||| |||||
Sbjct 22290 CTGCCGAGTTGGTCGTCTCGAC--TCGTATCACCTCCGATACGGCCTGGTTCCTCCTGGA 22347
Query 18883 CACCACCAAGCCGGTAAAACCGTTCATCTTCCAGCCCAGGAAACAGCCGGAATTCGTTTC 18942
||| | |||||| ||| || ||||||| |||| | || || | |||||
Sbjct 22348 CACAAGCAAGCCCGTACGCCCCTTCATCTACCAGGAGCGCAAGGCTCCAGTCTTCGTCCA 22407
Query 18943 CCAGGTCAACCTGGATTCGGATGACGTCTTCAACCTGCGCAAG---CTGAAGTTCGGCGC 18999
||| | | | || | || ||||| |||| |||||| | |||||||| ||
Sbjct 22408 GCAGACCGATCCCGAAGCTGAAGACGTTTTCA---GTCGCAAGAAATTCAAGTTCGGGGC 22464
Query 19000 CGAAGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAGCTGGCCTATGGCTCCACCGGCAC 19059
||||| || || || | ||||| ||||||||||| ||||||| ||||| || |||
Sbjct 22465 AGAAGCACGGGCGGCCGGTGGTTATGGCTTCTGGCAACTGGCCTTCGGCTCGACTGGC-- 22522
Query 19060 TGGCGCATAAGGGGG 19074
| || ||||||||
Sbjct 22523 -GAAGCGTAAGGGGG 22536
Score = 167 bits (184), Expect = 5e-37
Identities = 483/724 (67%), Gaps = 52/724 (7%)
Strand=Plus/Plus
Query 6193 AGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGATG 6252
||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||
Sbjct 8689 AGCGAAACCGCCCCGGCGT-GCTGGGACGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 8747
Query 6253 AGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCGCGGGA 6310
|||||||||||||||| ||||| ||| | |||| ||||| |||||||| || ||
Sbjct 8748 AGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCCAAACCCGCCTGGCACGCGA 8805
Query 6311 ACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTCGCGC--TGCGCTGGGCGGCCGC 6368
||| |||| || |||| ||||||| | || |||| || |||| | | ||
Sbjct 8806 ACGTAAACGTGCCCAGCGTAAGCGCGA--CAGTGAAAAGCGCCTGGCTATGGGGGCCAGC 8863
Query 6369 CGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCC 6428
|||| ||||| || ||| || || | | || || | |||| || | |||
Sbjct 8864 AAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCGCACTGCC 8923
Query 6429 GGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGAAAT- 6487
||| | |||| ||| | | | ||| |||| || | | || || |||| | |
Sbjct 8924 GGTAGATTCGACGAAACAGAGCATGCGCTCACGATGGCCATTCATGGTGTCGCCGCATTG 8983
Query 6488 TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCCATCCAGG 6544
| | || | ||| || || |||| || || |||| |||| || |
Sbjct 8984 TCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGA------------G 9026
Query 6545 GAGGACCAAGCGATGAGCCTACGCG---CCGTCAACCTCGCAAAAATCCACATCGCCAAG 6601
|| ||| || || |||| || || ||| || || |||||||||||||||
Sbjct 9027 GAAGAC--AGTGA-----CTACACGTAACCTGCAATTGAGC-AAGATCCACATCGCCAAG 9078
Query 6602 GCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGGCGTG 6661
| || || |||| ||||| ||||| ||||| ||| ||| ||||| || | |||
Sbjct 9079 AAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTGGGCCGCGTGGCAGATGTG 9138
Query 6662 CGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCAGCGC 6721
|| |||||||| || | ||| |||||||||| | ||||||| ||| || |||
Sbjct 9139 CGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTACTGGCCGAGTTCGCTCGC 9198
Query 6722 CTGGGCTGGAAAC---CGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGTGCCG--- 6775
||||||||| | | | ||| || ||| || | || | | || |||| ||
Sbjct 9199 CTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCAAAG-CACCAGTGGCGGCT 9255
Query 6776 CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCGCCC 6834
| | |||| | ||| | || || | ||||| || | || || || | || |
Sbjct 9256 CCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCTCTCCGAGGCAAAGCGTTC 9314
Query 6835 CTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTGGCT 6894
|||| ||| |||||| ||||||| |||||||||| ||||||| || ||||| |||||
Sbjct 9315 CTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAACGCGTCGAATGGCT 9374
Query 6895 GGAC 6898
|||
Sbjct 9375 AGAC 9378
Score = 134 bits (148), Expect = 3e-27
Identities = 321/475 (68%), Gaps = 33/475 (7%)
Strand=Plus/Plus
Query 647 GCATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGCGACTTCACCAAGC---TGCTCCC 703
||| ||| |||| || |||| || |||| |||||| | ||||||| || |||
Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671
Query 704 GACCGACGTCTATTCATG--CGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATG 761
| |||||| ||||| ||||||||||| ||| || || ||||| | |||| | |
Sbjct 2672 GTGCGACGT--ATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACG 2728
Query 762 CAC-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAAT 820
||| ||| ||| | ||| |||||| |||||| || |||| || ||| || ||
Sbjct 2729 CACCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAG 2786
Query 821 TCCG--GGATGGTCCACCGGCTTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGT 878
||| || |||| || ||||||||| || | | || | || |||||||||
Sbjct 2787 GCCGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGT 2846
Query 879 GACGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTA 937
|||||| |||| || |||||| || | |||||||| |||||||| || ||||
Sbjct 2847 GACGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTT 2902
Query 938 CATCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGATAT 997
|||| ||| | || || | | ||| || | | ||| |||| |||
Sbjct 2903 TGCCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCAC---TAT 2950
Query 998 GAAGAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAG 1057
|| | | ||||||||||||||||||| || ||| | |||||||| |||||| |
Sbjct 2951 GACCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAAC 3010
Query 1058 CCTGTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 1112
| ||| | || |||||| | ||| || |||||||||||||||||||||||
Sbjct 3011 GATTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065
>seq8567
Length=29384
Score = 154 bits (170), Expect = 3e-33
Identities = 133/162 (82%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 23292 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 23351
||||||||||||| |||||||||||||| || || ||||||||||||||||||||||
Sbjct 4898 CGATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGG 4839
Query 23352 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 23410
| ||||| ||||| || ||||| || | ||| |||||| | || ||||| ||||| ||
Sbjct 4838 CAGACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCT 4780
Query 23411 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 23452
||||||||| |||||| ||||| || || ||||| ||||||
Sbjct 4779 TCGGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGAT 4738
Score = 118 bits (130), Expect = 2e-22
Identities = 436/674 (65%), Gaps = 18/674 (3%)
Strand=Plus/Minus
Query 24239 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 24298
||| |||| |||||||||||||||| || || || |||||||| | | |||
Sbjct 4017 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCCCTGGAGGCCGTCAAAGGCAAG 3958
Query 24299 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 24358
| ||||| || || |||||| ||||| |||||||||||||||| || || |
Sbjct 3957 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 3898
Query 24359 AACATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 24416
||||||||||||||||| |||||||| | | || || || | ||| |||||
Sbjct 3897 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCA--CCAACG 3840
Query 24417 AACAGGGGCGCCTGAAGAAACAGACCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 24476
| || |||||| | ||| | | || ||| ||||| | || || |
Sbjct 3839 AGACCGGACGCCTGGCCGAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 3780
Query 24477 AACAACAGGATGCGCTGGCCCTCCAGGGCCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 24536
| |||||| || |||| || |||||||| || | || ||||||| ||| |
Sbjct 3779 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 3720
Query 24537 --CGCAACAGCGCCGCCTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCGCAGCA 24594
||| | | ||| || || | | ||||| | ||||| || || |||||
Sbjct 3719 ACCGCCAGAACGC--ACTCAACGGCGAACTGAACAGCCAGCAAGACCGGTTTGCTCAGCA 3662
Query 24595 GCGCCTGGACCTGGCGAGCCAGTATGGTGACGGCTCGCGAGGCATGAGCCTCGACGAGTA 24654
| ||||| |||| | |||| | ||| ||||| |||| || ||||
Sbjct 3661 GTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGTT 3602
Query 24655 CAA-CGACAAGCTCAAGGCGCT---GGAAGCGAACCATGCCGCGA-TGACCCAGCAGCTG 24709
||| ||| || | | ||||||| || |||||| | ||||| | |||| ||| |
Sbjct 3601 CAAGCGAAAATC-CCAGGCGCTCGCAGATGCGAACAAGGCCGCCACTGAC----CAGATC 3547
Query 24710 CAACGCAACTACGCCGACCTTCAGGCCGCCCAGGGCAACTGGGTCAACGGGGCGACGTCG 24769
| | ||||| || || | || |||||||||| | ||| || || |||||||||
Sbjct 3546 CGGCAGAACTATGCGGATGTGGAGAACGCCCAGGGCGATTGGACGAAGGGCGCGACGTCG 3487
Query 24770 GCGTTCGCTGACTACATCGACTCCGCCAGGAACAGTGCGGGCCAGACCTACGAACTGTTT 24829
|||| || | || | || || || | ||||| || ||||||||| | |||||
Sbjct 3486 GCGTGGGCCAATTATCTGGATTCGGCGAAGAACATCGCCGGCCAGACCAAGACCCTGTTC 3427
Query 24830 AGTAACGCCTTCTCCGGTCTGGAGGATGCCGTCGTTAATTTCGTGATGACTGGCAAGGCG 24889
| || |||||| | |||| ||||| || |||||||||| | | || || ||| |
Sbjct 3426 GGCAATGCCTTCAGCTCCATGGAAGATGCGGTTGTTAATTTCGCGCTTACCGGGAAGCTG 3367
Query 24890 TCGCTGGATGACTT 24903
||| | | ||||||
Sbjct 3366 TCGTTTGCTGACTT 3353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 110396307091590
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