Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_023700.1 Length=34553 Score E Sequences producing significant alignments: (Bits) Value seq8416 403 4e-108 seq8567 154 3e-33 >seq8416 Length=35894 Score = 403 bits (446), Expect = 4e-108 Identities = 898/1335 (67%), Gaps = 27/1335 (2%) Strand=Plus/Plus Query 17753 GACCGCAACACCCCGCTCCAGGACGCCGAGGTCATCGGCGTGCCGGTAGCGGCCAACGTC 17812 || ||||| || || | ||| | ||||||| | | || || || || ||||||||| Sbjct 21216 GATCGCAATACGCCCATGAAGGCCACCGAGGTTCTGGTGGTTCCCGTTGCCGCCAACGTC 21275 Query 17813 CAGGTCTTCGCCGGCGCCATCGTCGTGGCGAACGCTACCGGGTTCGCCGTGGGCGGCAGC 17872 | ||||||| ||| | | || || || ||||| || || || || | || Sbjct 21276 CGCATCTTCGCGGGCTCTCTGGTAGTCGCTAACGCCACTGGTTTTGCTGCACCTGGTTCA 21335 Query 17873 ACCGCCACCGGCCTGACCTACCTGGGCCGCGCTGAGGAATACGTGGACAACCGCAATGGC 17932 |||||| |||||| ||||||| ||||| || || || | || |||||||| ||| Sbjct 21336 ACCGCCCTGGGCCTGTCCTACCTCGGCCGTGCCGAAGAGTCAGTCGACAACCGTGGCGGC 21395 Query 17933 GCGGATGGCGCCAAGGTC--GTCCGTGTGCGCCGCC-TG--AACGCCTTCAAGTGGGCGA 17987 || | ||| || | || ||| | | ||||| || || || ||| ||| | | Sbjct 21396 GCAGCTGGTGCT--GCTCAGGTC---GAGATCCGCCATGGCAAGGCATTCCTCTGGACCA 21450 Query 17988 ACGACGGCAGCGTCACCCAGGCGCACCTGATGAAACCCGCCTACATCGTGGACGACCAGA 18047 | ||||||| | ||||||||||| ||||| | || ||||| |||||||| || ||| | | Sbjct 21451 ATGACGGCACCATCACCCAGGCGTACCTGTTCAAGCCCGCTTACATCGTCGATGACGAAA 21510 Query 18048 CCGTCGCCGCCACGGACGGCACCGAAACCCGCTCCCCGGCCGGCCGCATCATCGGCGTCG 18107 |||| || || | || | || ||||| ||| | || || |||||| |||| | | Sbjct 21511 CCGTAGCGGCTGCTGATGCAGGCGGCACCCGATCCACTGCTGGACGCATCGTCGGTATTG 21570 Query 18108 AACCGGACGGCGTGTGGGTGGAATAACAGGCTCACCAAC--GGAGAACCGGACACATGCT 18165 | | ||||||||||||| || |||| ||| | |||| | | |||| | Sbjct 21571 ATACCAACGGCGTGTGGGTTGAGTAACTCCCTCTATATATAGGAGCGCATTGCGCATGTT 21630 Query 18166 GATCAACAAGCAGAGTCTCAACGCGGCATTCGTCGCGATCAAAACCATCTTCAACAACGC 18225 | |||||| || | || ||||| || || | |||||| | ||||||||||| Sbjct 21631 AGTTAACAAGTCCTCGATCCAGGCAGCATTTGTTGCCCTGAAAACCCTTTTCAACAACGC 21690 Query 18226 CTTCGCGGCGGCCCCCACCACCTGGCAGAAGATCGCCATGGAAGTGCCGAGCAACACCAG 18285 ||| ||| | || |||| | ||||| | |||||||||||| | ||||| |||| ||| | Sbjct 21691 CTTTGCGACCGCACCCAGCGCCTGGGAAAAGATCGCCATGAAGGTGCCAAGCACCACTGG 21750 Query 18286 CAGCAACGATTACAAGTGGTTGAGCACCTTTCCGAAGATGCGCCGCTGGATCGGCGCGAA 18345 | |||| || |||| || | ||||| || |||||||| ||| | |||| || Sbjct 21751 CGCCAACATGTATGCGTGGCTGTCGGCGTTTCCAAAAATGCGCCGTTGGGTTGGCGAAAA 21810 Query 18346 GGTGGTCAAGAACCTGAAAGCCTACAAGTACGTTGTCGAGAACGAGGACTTCGAGGCCAC 18405 | || |||| ||| || || | || ||| || || ||||| || || || || || Sbjct 21811 GCACGTTAAGAGCCTCAAGGCGTTCAGCTACACCGTAGAAAACGAAGATTTTGAAGCGAC 21870 Query 18406 CGTCGAGGTGGACCGCAACGACATCGAGGACGACCAAATCGGCATCTACTCGCCCCAGGC 18465 ||||| || ||||||||| | ||||| ||||| || | ||||| || |||||||||| Sbjct 21871 TGTCGAAGTTGACCGCAACCATATCGAAGACGATCAGTTGGGCATTTATGCGCCCCAGGC 21930 Query 18466 GAAGATGGCCGGTTACTCGGCGGCTCAGCTCCCGGACGAGCTGGTCTATGAAGCGGTCAA 18525 | | ||||| || | ||| || ||| | ||||| || | || | || ||| || Sbjct 21931 GCAAATGGCAGGCTTCTCAGCAAAGCAGTTGCCGGATGAAATCGTATTCGAGTTGGTGAA 21990 Query 18526 CGGCGCCTTCACCAAGCCCTGTTTCGACGGCCAGTATTTCATCGACACGGATCACCCTGT 18585 ||||| || ||| | || | |||||||||||| ||| ||||||| || ||| || Sbjct 21991 CGGCGGTTTTGGCAACCTGTGCTACGACGGCCAGTACTTCTTCGACACCGACCACGTCGT 22050 Query 18586 CGGTGATGCCTCGGTGAGCAACAAGGGCACCGCTCCGCTTTCCAACGCCAGCCAGGCGGC 18645 ||| || || |||||||| ||||| || ||||||||| | | |||||||| Sbjct 22051 CGGCACTGGTAGCGTCAGCAACAAAGGCACGGCGGCGCTTTCCATTACGACTCAGGCGGC 22110 Query 18646 GGCGAAGGCAGGTTATGGCGCTGCTCGCACTGCGATGAAGAAGTTCAAAGACGAGGAAGG 18705 || |||| | |||||||| || ||||| || ||| |||||||| ||||| || || Sbjct 22111 AGCCAAGGGCAGCTATGGCGCAGCACGCACCGCCATGGGCAAGTTCAAGGACGATGATGG 22170 Query 18706 ACGTTCCCTCAACGTCTCCCCCAAC-GTGCTCCTGGTCGGCCCGGCGCTGGAAGACGTGG 18764 ||| | || | || | |||||| | |||||||||||||| | |||||||| | Sbjct 22171 CCGTCCTCTGGATGT-GCGCCCAACAATCCTCCTGGTCGGCCCAGGTTTGGAAGACACCG 22229 Query 18765 CGAAGATGCTGCTCACCAACCCGAAGCTCGCGGACAACACCCCGAACCCCTACGTCGGCA 18824 | || | |||| || | ||| || |||| |||| || | Sbjct 22230 CCCGCGCCTTGTTGACCAGTGATCGCCTGGAAGACGGCAAGGTCAACCTCTACAAGGGTA 22289 Query 18825 CTGCTGAGCTGGTAG--TGGACGGGCGTATCGAGTCCGACACCGCCTGGTTCCTGCTGGA 18882 |||| ||| |||| | | ||| |||||| ||||| || ||||||||||| ||||| Sbjct 22290 CTGCCGAGTTGGTCGTCTCGAC--TCGTATCACCTCCGATACGGCCTGGTTCCTCCTGGA 22347 Query 18883 CACCACCAAGCCGGTAAAACCGTTCATCTTCCAGCCCAGGAAACAGCCGGAATTCGTTTC 18942 ||| | |||||| ||| || ||||||| |||| | || || | ||||| Sbjct 22348 CACAAGCAAGCCCGTACGCCCCTTCATCTACCAGGAGCGCAAGGCTCCAGTCTTCGTCCA 22407 Query 18943 CCAGGTCAACCTGGATTCGGATGACGTCTTCAACCTGCGCAAG---CTGAAGTTCGGCGC 18999 ||| | | | || | || ||||| |||| |||||| | |||||||| || Sbjct 22408 GCAGACCGATCCCGAAGCTGAAGACGTTTTCA---GTCGCAAGAAATTCAAGTTCGGGGC 22464 Query 19000 CGAAGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAGCTGGCCTATGGCTCCACCGGCAC 19059 ||||| || || || | ||||| ||||||||||| ||||||| ||||| || ||| Sbjct 22465 AGAAGCACGGGCGGCCGGTGGTTATGGCTTCTGGCAACTGGCCTTCGGCTCGACTGGC-- 22522 Query 19060 TGGCGCATAAGGGGG 19074 | || |||||||| Sbjct 22523 -GAAGCGTAAGGGGG 22536 Score = 167 bits (184), Expect = 5e-37 Identities = 483/724 (67%), Gaps = 52/724 (7%) Strand=Plus/Plus Query 6193 AGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGATG 6252 ||||||||||||||||| | || |||||||||||||||||||||| |||||||||||||| Sbjct 8689 AGCGAAACCGCCCCGGCGT-GCTGGGACGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 8747 Query 6253 AGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCGCGGGA 6310 |||||||||||||||| ||||| ||| | |||| ||||| |||||||| || || Sbjct 8748 AGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCCAAACCCGCCTGGCACGCGA 8805 Query 6311 ACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTCGCGC--TGCGCTGGGCGGCCGC 6368 ||| |||| || |||| ||||||| | || |||| || |||| | | || Sbjct 8806 ACGTAAACGTGCCCAGCGTAAGCGCGA--CAGTGAAAAGCGCCTGGCTATGGGGGCCAGC 8863 Query 6369 CGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCC 6428 |||| ||||| || ||| || || | | || || | |||| || | ||| Sbjct 8864 AAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCGCACTGCC 8923 Query 6429 GGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGAAAT- 6487 ||| | |||| ||| | | | ||| |||| || | | || || |||| | | Sbjct 8924 GGTAGATTCGACGAAACAGAGCATGCGCTCACGATGGCCATTCATGGTGTCGCCGCATTG 8983 Query 6488 TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCCATCCAGG 6544 | | || | ||| || || |||| || || |||| |||| || | Sbjct 8984 TCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGA------------G 9026 Query 6545 GAGGACCAAGCGATGAGCCTACGCG---CCGTCAACCTCGCAAAAATCCACATCGCCAAG 6601 || ||| || || |||| || || ||| || || ||||||||||||||| Sbjct 9027 GAAGAC--AGTGA-----CTACACGTAACCTGCAATTGAGC-AAGATCCACATCGCCAAG 9078 Query 6602 GCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGGCGTG 6661 | || || |||| ||||| ||||| ||||| ||| ||| ||||| || | ||| Sbjct 9079 AAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTGGGCCGCGTGGCAGATGTG 9138 Query 6662 CGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCAGCGC 6721 || |||||||| || | ||| |||||||||| | ||||||| ||| || ||| Sbjct 9139 CGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTACTGGCCGAGTTCGCTCGC 9198 Query 6722 CTGGGCTGGAAAC---CGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGTGCCG--- 6775 ||||||||| | | | ||| || ||| || | || | | || |||| || Sbjct 9199 CTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCAAAG-CACCAGTGGCGGCT 9255 Query 6776 CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCGCCC 6834 | | |||| | ||| | || || | ||||| || | || || || | || | Sbjct 9256 CCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCTCTCCGAGGCAAAGCGTTC 9314 Query 6835 CTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTGGCT 6894 |||| ||| |||||| ||||||| |||||||||| ||||||| || ||||| ||||| Sbjct 9315 CTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAACGCGTCGAATGGCT 9374 Query 6895 GGAC 6898 ||| Sbjct 9375 AGAC 9378 Score = 134 bits (148), Expect = 3e-27 Identities = 321/475 (68%), Gaps = 33/475 (7%) Strand=Plus/Plus Query 647 GCATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGCGACTTCACCAAGC---TGCTCCC 703 ||| ||| |||| || |||| || |||| |||||| | ||||||| || ||| Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 704 GACCGACGTCTATTCATG--CGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATG 761 | |||||| ||||| ||||||||||| ||| || || ||||| | |||| | | Sbjct 2672 GTGCGACGT--ATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACG 2728 Query 762 CAC-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAAT 820 ||| ||| ||| | ||| |||||| |||||| || |||| || ||| || || Sbjct 2729 CACCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAG 2786 Query 821 TCCG--GGATGGTCCACCGGCTTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGT 878 ||| || |||| || ||||||||| || | | || | || ||||||||| Sbjct 2787 GCCGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGT 2846 Query 879 GACGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTA 937 |||||| |||| || |||||| || | |||||||| |||||||| || |||| Sbjct 2847 GACGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTT 2902 Query 938 CATCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGATAT 997 |||| ||| | || || | | ||| || | | ||| |||| ||| Sbjct 2903 TGCCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCAC---TAT 2950 Query 998 GAAGAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAG 1057 || | | ||||||||||||||||||| || ||| | |||||||| |||||| | Sbjct 2951 GACCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAAC 3010 Query 1058 CCTGTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 1112 | ||| | || |||||| | ||| || ||||||||||||||||||||||| Sbjct 3011 GATTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 >seq8567 Length=29384 Score = 154 bits (170), Expect = 3e-33 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 23292 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 23351 ||||||||||||| |||||||||||||| || || |||||||||||||||||||||| Sbjct 4898 CGATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGG 4839 Query 23352 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 23410 | ||||| ||||| || ||||| || | ||| |||||| | || ||||| ||||| || Sbjct 4838 CAGACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCT 4780 Query 23411 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 23452 ||||||||| |||||| ||||| || || ||||| |||||| Sbjct 4779 TCGGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGAT 4738 Score = 118 bits (130), Expect = 2e-22 Identities = 436/674 (65%), Gaps = 18/674 (3%) Strand=Plus/Minus Query 24239 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 24298 ||| |||| |||||||||||||||| || || || |||||||| | | ||| Sbjct 4017 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCCCTGGAGGCCGTCAAAGGCAAG 3958 Query 24299 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 24358 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 3957 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 3898 Query 24359 AACATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 24416 ||||||||||||||||| |||||||| | | || || || | ||| ||||| Sbjct 3897 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCA--CCAACG 3840 Query 24417 AACAGGGGCGCCTGAAGAAACAGACCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 24476 | || |||||| | ||| | | || ||| ||||| | || || | Sbjct 3839 AGACCGGACGCCTGGCCGAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 3780 Query 24477 AACAACAGGATGCGCTGGCCCTCCAGGGCCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 24536 | |||||| || |||| || |||||||| || | || ||||||| ||| | Sbjct 3779 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 3720 Query 24537 --CGCAACAGCGCCGCCTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCGCAGCA 24594 ||| | | ||| || || | | ||||| | ||||| || || ||||| Sbjct 3719 ACCGCCAGAACGC--ACTCAACGGCGAACTGAACAGCCAGCAAGACCGGTTTGCTCAGCA 3662 Query 24595 GCGCCTGGACCTGGCGAGCCAGTATGGTGACGGCTCGCGAGGCATGAGCCTCGACGAGTA 24654 | ||||| |||| | |||| | ||| ||||| |||| || |||| Sbjct 3661 GTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGTT 3602 Query 24655 CAA-CGACAAGCTCAAGGCGCT---GGAAGCGAACCATGCCGCGA-TGACCCAGCAGCTG 24709 ||| ||| || | | ||||||| || |||||| | ||||| | |||| ||| | Sbjct 3601 CAAGCGAAAATC-CCAGGCGCTCGCAGATGCGAACAAGGCCGCCACTGAC----CAGATC 3547 Query 24710 CAACGCAACTACGCCGACCTTCAGGCCGCCCAGGGCAACTGGGTCAACGGGGCGACGTCG 24769 | | ||||| || || | || |||||||||| | ||| || || ||||||||| Sbjct 3546 CGGCAGAACTATGCGGATGTGGAGAACGCCCAGGGCGATTGGACGAAGGGCGCGACGTCG 3487 Query 24770 GCGTTCGCTGACTACATCGACTCCGCCAGGAACAGTGCGGGCCAGACCTACGAACTGTTT 24829 |||| || | || | || || || | ||||| || ||||||||| | ||||| Sbjct 3486 GCGTGGGCCAATTATCTGGATTCGGCGAAGAACATCGCCGGCCAGACCAAGACCCTGTTC 3427 Query 24830 AGTAACGCCTTCTCCGGTCTGGAGGATGCCGTCGTTAATTTCGTGATGACTGGCAAGGCG 24889 | || |||||| | |||| ||||| || |||||||||| | | || || ||| | Sbjct 3426 GGCAATGCCTTCAGCTCCATGGAAGATGCGGTTGTTAATTTCGCGCTTACCGGGAAGCTG 3367 Query 24890 TCGCTGGATGACTT 24903 ||| | | |||||| Sbjct 3366 TCGTTTGCTGACTT 3353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110396307091590