Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2393 152 1e-31 seq29849 136 8e-27 >seq2393 Length=4323 Score = 152 bits (168), Expect = 1e-31 Identities = 181/243 (74%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 82568 CTCCATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTG 82627 |||||| ||||| |||||| | || || ||||| | ||| || ||||| || ||||| Sbjct 1916 CTCCATC-ATCAC--ACCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTG 1972 Query 82628 TATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCT 82687 || || || |||| ||| | || || ||||||| || || || |||||||| |||| Sbjct 1973 GATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCG 2032 Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 ||| || || || || || || ||||| || |||||||| | || |||||||| || || Sbjct 2033 TTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGT 2092 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 |||||| | || || || | ||| || ||||||||||| | ||||| || || ||||| Sbjct 2093 ATCATTCGACTCCACCTCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAACGAAGATCTG 2152 Query 82808 CAT 82810 ||| Sbjct 2153 CAT 2155 >seq29849 Length=3363 Score = 136 bits (150), Expect = 8e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 |||| |||| ||||| | ||||| || | ||| || || || || || || || || || Sbjct 1039 TCACTTACCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTA 1098 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 || | || | | |||||| || ||||| ||||| || ||||| | || || || || Sbjct 1099 GTCGGCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTC 1158 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 || || || |||||||| || || ||||| | || || || |||||||| || || | Sbjct 1159 AGGCGGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGA 1218 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| | ||| ||||||||||| |||| ||||| ||||| || |||||| Sbjct 1219 CTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATT 1273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981331397821007