Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq26061 156 4e-33 seq21875 150 2e-31 seq29849 136 4e-27 seq34640 123 2e-23 seq34427 114 1e-20 seq36249 82.4 7e-11 >seq26061 Length=1673 Score = 156 bits (172), Expect = 4e-33 Identities = 364/536 (68%), Gaps = 15/536 (3%) Strand=Plus/Minus Query 120364 ACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAAC 120423 ||||| || || || |||||||| ||||| | || || ||| | ||| || |||||| Sbjct 1258 ACGCGCTTTTCGAAGAAGTTTGTCTTGCCTTGCAGGGAGATGAGCTCCATGAAGTCGAAC 1199 Query 120424 GGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACA 120483 ||||| || ||| |||| ||| | ||| | |||| ||||||||| || Sbjct 1198 GGGTTCGCCGTGTTGTAGTACTTCTCGTAGCCGAGAGTCACGAACAGTCGGTCGCACACG 1139 Query 120484 AACTCAATGTACT-CGCACATGGACTGCGC-GTTCATGCCCAGCAACGCCACCGGCAACG 120541 ||||| ||||||| ||| ||| | ||| |||||| || | || | ||||||| | Sbjct 1138 AACTCGATGTACTTCGC-CATCAGGT-CGCTGTTCATCCCGATCAGCTTGACCGGCAGTG 1081 Query 120542 CCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGT 120601 | ||| | |||||||||||| ||| | || |||||| | || | | || | | Sbjct 1080 CGTCCGTTACAAACTCCTTCTCGATGGCTACAGCCTCCGCAAGCAATTCCACCACACGCT 1021 Query 120602 GGCCGGGCAT-CTTGTGT--TCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGT 120658 | | | | ||||| |||| || ||| |||| |||||| || ||||| || Sbjct 1020 CCCTGCTGAGGCGTGTGTACTCGA-GCTTGTT--GTAGAGCAGGCAGGCGAAGTCGCAGT 964 Query 120659 GCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTT 120718 ||| ||||||||| || || || |||||| | |||||||| || ||||| | || Sbjct 963 GCATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGCCCCGGCATCAGCCCCC 904 Query 120719 TCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAA-AAGAACACGCCCTCCACGATG 120777 | |||| | |||| || | | || | | |||| | ||||| | ||||||||| Sbjct 903 GCTTCTTCAGCCAGAAGATCGAG-CAGAACGACCCGGAGAAGAAGATGCCCTCCACCGCT 845 Query 120778 GCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCC 120837 || || ||||| | | ||| || ||||| || | |||| |||||||||| |||||| Sbjct 844 GCGAACGCGACGAGCCTCTCCGCGAACGTGGCGGA---GCTGCCGATCCACTTGATGGCC 788 Query 120838 CACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCATGTC 120893 ||||||||||| || |||||||||| | | || ||| || | |||| |||| Sbjct 787 CACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCTTGAACAGCGTGTC 732 >seq21875 Length=4161 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| ||| ||| ||||||||||||||| || Sbjct 246 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCTGCCGTCCTCGAGCTGCTTTCC 305 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || | |||||||||||| ||||| ||||||||||| |||||| ||| Sbjct 306 GGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTAGACTT 365 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||||| | | |||||| || | ||||| || || |||||||| || Sbjct 366 CACATTCTCGATCGTGTCGTTTGACTCCACCTCAAGGGTGATCGTCTTCCCGGTCAGGGT 425 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 426 CTTCACGAAAATCTGCAT 443 >seq29849 Length=3363 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| || || || ||||| ||| | | ||| ||| ||||||||| ||||| | Sbjct 1075 GGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACC-GTCCTCGAGTTGCTTTC 1133 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | ||||||||||| || ||||||||||||||||| |||||| || Sbjct 1134 CTGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTCGACT 1193 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||||| ||| ||| || |||| |||| || ||||||||||| | Sbjct 1194 TCACGTTCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGTG 1253 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||| ||||| Sbjct 1254 TCTTCACAAAAATTTGCAT 1272 >seq34640 Length=3269 Score = 123 bits (136), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | ||| |||||| |||||||| || Sbjct 1146 GTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTCCTCCAGCTGCTTCCCG 1205 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | |||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1206 GCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTC 1265 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | | ||| || |||| |||| || ||||| ||||| || Sbjct 1266 ACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTCTTGCCCGTCAGGGTC 1325 Query 133644 TTTACGAAAATCTGCA---TGGCTTATTTATTCCTTCCTCTTACTGTATTAGT 133693 || ||||| ||||||| |||||||||| || | |||||| || |||| || Sbjct 1326 TTAACGAAGATCTGCATCTTGGCTTATTTCTTAC-CCCTCTTCCT-TATTTGT 1376 >seq34427 Length=4033 Score = 114 bits (126), Expect = 1e-20 Identities = 189/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 149406 TTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAG-TCGCCGAG 149464 ||||| |||| | ||||||||||||| | ||| ||||| ||||||| || | || Sbjct 3179 TTGTGAACGTGTATGCCGATGCCGCCGGCAGTCTTCGAGATCATCGCGCAGGTCTTC-AG 3121 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 |||| |||||| |||||||| |||| |||||||| | || ||||| || |||| Sbjct 3120 CGTCTCGTAGATCCCCTCGATAGAGTCGTCCTTCATGGCTACAAGGAAGCATGACGACAT 3061 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTG 149584 |||||| | || || || ||||| || ||| | || || || |||| | Sbjct 3060 TTGCGGGTTGGGTGTCCCTGCGTTGAACAACGTTGGGGTTGCATGGGTGAAATCACCGTT 3001 Query 149585 GCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGC 149644 ||| | || || ||||| || | || || |||| ||| |||||||| |||| Sbjct 3000 GCTGAGCAGCTTGTACGTTTCCACGACCTTTTCGATGTTCTCGAAGTGGATGCCAATGGA 2941 Query 149645 GACGCGCATCAGCATATGCTGCGGTCGCTC 149674 ||||||||||||||| |||||||| || || Sbjct 2940 GACGCGCATCAGCATGTGCTGCGGGCGTTC 2911 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 149243 GAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CC 149299 ||| |||||||||||||||||||| | ||| | |||| | ||||| |||||| || Sbjct 3702 GAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGCGAAGGAACCCTTTCGCTTGCCTCC 3643 Query 149300 GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCC 149356 ||| |||||||||| ||| || ||| ||| ||||| |||| ||| ||| | | ||| Sbjct 3642 GCCTTGGTCGACGTAACGCGCCGTGTCGTTGAACACGCGAAGCATCGGTACGAGGCC 3586 >seq36249 Length=3418 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133548 GGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGC 133607 || ||||| ||||||||||| ||||||| ||| | | ||||| |||||| ||| | Sbjct 3418 GGCGGGATACCTTCCTTGTCCTGGATCTTTGACTTCACGTTCTCAATCGTGTCATTGGAC 3359 Query 133608 TCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||| |||| || ||||| ||||| ||||| || || |||||||| Sbjct 3358 TCGACCTCGAGTGTGATCGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 3306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483182636700120