Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_024782.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq8416 242 9e-60 seq8567 154 3e-33 >seq8416 Length=35894 Score = 242 bits (268), Expect = 9e-60 Identities = 277/372 (74%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 1364 GTAAAGACGAAGCGAGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACAT 1423 |||||| | | ||| || |||||||| || ||||| ||| | || | ||||| Sbjct 1429 GTAAAGCGGCAAGGAGTGCCTGAACATGCGTAACCAAAAAGATGACAGAACATTAGACAT 1488 Query 1424 CTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGTGAGTGCAACTACGCCGCCCAAAT 1483 |||| |||||||||||||| | ||||||| ||| | ||||||| |||||||| | Sbjct 1489 CTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGTCACGGCAACTATGCCGCCCAGGT 1548 Query 1484 CAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCGC 1543 |||||| |||||||||||| | || || | | |||| | ||||| || ||| | || || Sbjct 1549 CAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGACTTGGACCGCTATGAGATTGCGGC 1608 Query 1544 CCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAGAACATGCTCGACGCCTGGTCGAG 1603 |||||||| ||||| || ||||| ||||| || ||||||||| | ||||||||||| || Sbjct 1609 TCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAGAACATGTTAGACGCCTGGTCAAG 1668 Query 1604 CCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTG 1663 || ||||| | ||||||||||| ||| | || || || || | |||||||| ||||| Sbjct 1669 TCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGAGCTGCTTTGCTGGAGGAAGTCTG 1728 Query 1664 CGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTGCGTGGCGGCCGCGTGGCTTACGG 1723 || |||||| | ||||| || |||| || |||| || ||||| || ||||| || Sbjct 1729 TGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTGCGCGGTGGCCGGGTCGCTTATGG 1788 Query 1724 CCGCGATGCACT 1735 ||||| || || Sbjct 1789 GCGCGAGGCTCT 1800 Score = 167 bits (184), Expect = 5e-37 Identities = 483/724 (67%), Gaps = 52/724 (7%) Strand=Plus/Plus Query 8806 AGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGATG 8865 ||||||||||||||||| | || |||||||||||||||||||||| |||||||||||||| Sbjct 8689 AGCGAAACCGCCCCGGCGT-GCTGGGACGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 8747 Query 8866 AGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCGCGGGA 8923 |||||||||||||||| ||||| ||| | |||| ||||| |||||||| || || Sbjct 8748 AGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCCAAACCCGCCTGGCACGCGA 8805 Query 8924 ACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTCGCGC--TGCGCTGGGCGGCCGC 8981 ||| |||| || |||| ||||||| | || |||| || |||| | | || Sbjct 8806 ACGTAAACGTGCCCAGCGTAAGCGCGA--CAGTGAAAAGCGCCTGGCTATGGGGGCCAGC 8863 Query 8982 CGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCC 9041 |||| ||||| || ||| || || | | || || | |||| || | ||| Sbjct 8864 AAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCGCACTGCC 8923 Query 9042 GGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGAAAT- 9100 ||| | |||| ||| | | | ||| |||| || | | || || |||| | | Sbjct 8924 GGTAGATTCGACGAAACAGAGCATGCGCTCACGATGGCCATTCATGGTGTCGCCGCATTG 8983 Query 9101 TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCCATCCAGG 9157 | | || | ||| || || |||| || || |||| |||| || | Sbjct 8984 TCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGA------------G 9026 Query 9158 GAGGACCAAGCGATGAGCCTACGCG---CCGTCAACCTCGCAAAAATCCACATCGCCAAG 9214 || ||| || || |||| || || ||| || || ||||||||||||||| Sbjct 9027 GAAGAC--AGTGA-----CTACACGTAACCTGCAATTGAGC-AAGATCCACATCGCCAAG 9078 Query 9215 GCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGGCGTG 9274 | || || |||| ||||| ||||| ||||| ||| ||| ||||| || | ||| Sbjct 9079 AAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTGGGCCGCGTGGCAGATGTG 9138 Query 9275 CGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCAGCGC 9334 || |||||||| || | ||| |||||||||| | ||||||| ||| || ||| Sbjct 9139 CGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTACTGGCCGAGTTCGCTCGC 9198 Query 9335 CTGGGCTGGAAAC---CGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGTGCCG--- 9388 ||||||||| | | | ||| || ||| || | || | | || |||| || Sbjct 9199 CTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCAAAG-CACCAGTGGCGGCT 9255 Query 9389 CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCGCCC 9447 | | |||| | ||| | || || | ||||| || | || || || | || | Sbjct 9256 CCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCTCTCCGAGGCAAAGCGTTC 9314 Query 9448 CTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTGGCT 9507 |||| ||| |||||| ||||||| |||||||||| ||||||| || ||||| ||||| Sbjct 9315 CTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAACGCGTCGAATGGCT 9374 Query 9508 GGAC 9511 ||| Sbjct 9375 AGAC 9378 Score = 134 bits (148), Expect = 3e-27 Identities = 321/475 (68%), Gaps = 33/475 (7%) Strand=Plus/Plus Query 3262 GCATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGCGACTTCACCAAGC---TGCTCCC 3318 ||| ||| |||| || |||| || |||| |||||| | ||||||| || ||| Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 3319 GACCGACGTCTATTCATG--CGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATG 3376 | |||||| ||||| ||||||||||| ||| || || ||||| | |||| | | Sbjct 2672 GTGCGACGT--ATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACG 2728 Query 3377 CAC-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAAT 3435 ||| ||| ||| | ||| |||||| |||||| || |||| || ||| || || Sbjct 2729 CACCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAG 2786 Query 3436 TCCG--GGATGGTCCACCGGCTTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGT 3493 ||| || |||| || ||||||||| || | | || | || ||||||||| Sbjct 2787 GCCGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGT 2846 Query 3494 GACGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTA 3552 |||||| |||| || |||||| || | |||||||| |||||||| || |||| Sbjct 2847 GACGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTT 2902 Query 3553 CATCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGATAT 3612 |||| ||| | || || | | ||| || | | ||| |||| ||| Sbjct 2903 TGCCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCAC---TAT 2950 Query 3613 GAAGAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAG 3672 || | | ||||||||||||||||||| || ||| | |||||||| |||||| | Sbjct 2951 GACCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAAC 3010 Query 3673 CCTGTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 3727 | ||| | || |||||| | ||| || ||||||||||||||||||||||| Sbjct 3011 GATTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 87.8 bits (96), Expect = 4e-13 Identities = 209/310 (67%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||| ||||| | ||| | || || ||||| ||| ||| | || Sbjct 255 ATCCAACCGCCCGCCCAAACAACACGTCCCACAATCTCTAGGTCATTCAGGTTTTCTTTA 314 Query 237 GGGACGATCATT-TCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAA 295 | || |||| || | ||| ||| |||| | ||||| | | || ||| | | Sbjct 315 GAAACCTTCATGGTCTG-ATAAGCCGCGTTTGCGCTGATAACTGCTACGCCACCGCCAAT 373 Query 296 GCGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGA---CTGC 352 | | |||||| ||||| || || ||||||||||||| ||||| ||||||| || | Sbjct 374 CTGGCGTTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCTTC 433 Query 353 CGCGTCTTGGACCGTTG--ACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGC 410 | | || || | |||| ||| ||| || | | ||| || || ||||| | |||| Sbjct 434 CCCTTCCAGG-CTGTTGCGACT----GTGGTCGATCAACACAGTGTCGCCATCACTCAGC 488 Query 411 AGAGGCTCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCC 470 | |||||||||||||||| | | ||||| || |||| | || || ||||| ||| Sbjct 489 ACCCCCTCCATAGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCC 548 Query 471 TTTTTTCGCA 480 | || |||| Sbjct 549 TGCTTGCGCA 558 >seq8567 Length=29384 Score = 154 bits (170), Expect = 3e-33 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 25580 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25639 ||||||||||||| |||||||||||||| || || |||||||||||||||||||||| Sbjct 4898 CGATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGG 4839 Query 25640 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 25698 | ||||| ||||| || ||||| || | ||| |||||| | || ||||| ||||| || Sbjct 4838 CAGACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCT 4780 Query 25699 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 25740 ||||||||| |||||| ||||| || || ||||| |||||| Sbjct 4779 TCGGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGAT 4738 Score = 118 bits (130), Expect = 2e-22 Identities = 436/674 (65%), Gaps = 18/674 (3%) Strand=Plus/Minus Query 26527 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 26586 ||| |||| |||||||||||||||| || || || |||||||| | | ||| Sbjct 4017 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCCCTGGAGGCCGTCAAAGGCAAG 3958 Query 26587 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 26646 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 3957 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 3898 Query 26647 AACATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 26704 ||||||||||||||||| |||||||| | | || || || | ||| ||||| Sbjct 3897 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCA--CCAACG 3840 Query 26705 AACAGGGGCGCCTGAAGAAACAGACCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 26764 | || |||||| | ||| | | || ||| ||||| | || || | Sbjct 3839 AGACCGGACGCCTGGCCGAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 3780 Query 26765 AACAACAGGATGCGCTGGCCCTCCAGGGCCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 26824 | |||||| || |||| || |||||||| || | || ||||||| ||| | Sbjct 3779 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 3720 Query 26825 --CGCAACAGCGCCGCCTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCGCAGCA 26882 ||| | | ||| || || | | ||||| | ||||| || || ||||| Sbjct 3719 ACCGCCAGAACGC--ACTCAACGGCGAACTGAACAGCCAGCAAGACCGGTTTGCTCAGCA 3662 Query 26883 GCGCCTGGACCTGGCGAGCCAGTATGGTGACGGCTCGCGAGGCATGAGCCTCGACGAGTA 26942 | ||||| |||| | |||| | ||| ||||| |||| || |||| Sbjct 3661 GTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGTT 3602 Query 26943 CAA-CGACAAGCTCAAGGCGCT---GGAAGCGAACCATGCCGCGA-TGACCCAGCAGCTG 26997 ||| ||| || | | ||||||| || |||||| | ||||| | |||| ||| | Sbjct 3601 CAAGCGAAAATC-CCAGGCGCTCGCAGATGCGAACAAGGCCGCCACTGAC----CAGATC 3547 Query 26998 CAACGCAACTACGCCGACCTTCAGGCCGCCCAGGGCAACTGGGTCAACGGGGCGACGTCG 27057 | | ||||| || || | || |||||||||| | ||| || || ||||||||| Sbjct 3546 CGGCAGAACTATGCGGATGTGGAGAACGCCCAGGGCGATTGGACGAAGGGCGCGACGTCG 3487 Query 27058 GCGTTCGCTGACTACATCGACTCCGCCAGGAACAGTGCGGGCCAGACCTACGAACTGTTT 27117 |||| || | || | || || || | ||||| || ||||||||| | ||||| Sbjct 3486 GCGTGGGCCAATTATCTGGATTCGGCGAAGAACATCGCCGGCCAGACCAAGACCCTGTTC 3427 Query 27118 AGTAACGCCTTCTCCGGTCTGGAGGATGCCGTCGTTAATTTCGTGATGACTGGCAAGGCG 27177 | || |||||| | |||| ||||| || |||||||||| | | || || ||| | Sbjct 3426 GGCAATGCCTTCAGCTCCATGGAAGATGCGGTTGTTAATTTCGCGCTTACCGGGAAGCTG 3367 Query 27178 TCGCTGGATGACTT 27191 ||| | | |||||| Sbjct 3366 TCGTTTGCTGACTT 3353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117704884860800