Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02]
39,413 sequences; 107,915,492 total letters
Query= NC_024782.1
Length=36838
Score E
Sequences producing significant alignments: (Bits) Value
seq8416 242 9e-60
seq8567 154 3e-33
>seq8416
Length=35894
Score = 242 bits (268), Expect = 9e-60
Identities = 277/372 (74%), Gaps = 0/372 (0%)
Strand=Plus/Plus
Query 1364 GTAAAGACGAAGCGAGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACAT 1423
|||||| | | ||| || |||||||| || ||||| ||| | || | |||||
Sbjct 1429 GTAAAGCGGCAAGGAGTGCCTGAACATGCGTAACCAAAAAGATGACAGAACATTAGACAT 1488
Query 1424 CTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGTGAGTGCAACTACGCCGCCCAAAT 1483
|||| |||||||||||||| | ||||||| ||| | ||||||| |||||||| |
Sbjct 1489 CTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGTCACGGCAACTATGCCGCCCAGGT 1548
Query 1484 CAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCGC 1543
|||||| |||||||||||| | || || | | |||| | ||||| || ||| | || ||
Sbjct 1549 CAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGACTTGGACCGCTATGAGATTGCGGC 1608
Query 1544 CCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAGAACATGCTCGACGCCTGGTCGAG 1603
|||||||| ||||| || ||||| ||||| || ||||||||| | ||||||||||| ||
Sbjct 1609 TCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAGAACATGTTAGACGCCTGGTCAAG 1668
Query 1604 CCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTG 1663
|| ||||| | ||||||||||| ||| | || || || || | |||||||| |||||
Sbjct 1669 TCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGAGCTGCTTTGCTGGAGGAAGTCTG 1728
Query 1664 CGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTGCGTGGCGGCCGCGTGGCTTACGG 1723
|| |||||| | ||||| || |||| || |||| || ||||| || ||||| ||
Sbjct 1729 TGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTGCGCGGTGGCCGGGTCGCTTATGG 1788
Query 1724 CCGCGATGCACT 1735
||||| || ||
Sbjct 1789 GCGCGAGGCTCT 1800
Score = 167 bits (184), Expect = 5e-37
Identities = 483/724 (67%), Gaps = 52/724 (7%)
Strand=Plus/Plus
Query 8806 AGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGATG 8865
||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||
Sbjct 8689 AGCGAAACCGCCCCGGCGT-GCTGGGACGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 8747
Query 8866 AGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCGCGGGA 8923
|||||||||||||||| ||||| ||| | |||| ||||| |||||||| || ||
Sbjct 8748 AGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCCAAACCCGCCTGGCACGCGA 8805
Query 8924 ACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTCGCGC--TGCGCTGGGCGGCCGC 8981
||| |||| || |||| ||||||| | || |||| || |||| | | ||
Sbjct 8806 ACGTAAACGTGCCCAGCGTAAGCGCGA--CAGTGAAAAGCGCCTGGCTATGGGGGCCAGC 8863
Query 8982 CGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCC 9041
|||| ||||| || ||| || || | | || || | |||| || | |||
Sbjct 8864 AAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCGCACTGCC 8923
Query 9042 GGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGAAAT- 9100
||| | |||| ||| | | | ||| |||| || | | || || |||| | |
Sbjct 8924 GGTAGATTCGACGAAACAGAGCATGCGCTCACGATGGCCATTCATGGTGTCGCCGCATTG 8983
Query 9101 TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCCATCCAGG 9157
| | || | ||| || || |||| || || |||| |||| || |
Sbjct 8984 TCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGA------------G 9026
Query 9158 GAGGACCAAGCGATGAGCCTACGCG---CCGTCAACCTCGCAAAAATCCACATCGCCAAG 9214
|| ||| || || |||| || || ||| || || |||||||||||||||
Sbjct 9027 GAAGAC--AGTGA-----CTACACGTAACCTGCAATTGAGC-AAGATCCACATCGCCAAG 9078
Query 9215 GCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGGCGTG 9274
| || || |||| ||||| ||||| ||||| ||| ||| ||||| || | |||
Sbjct 9079 AAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTGGGCCGCGTGGCAGATGTG 9138
Query 9275 CGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCAGCGC 9334
|| |||||||| || | ||| |||||||||| | ||||||| ||| || |||
Sbjct 9139 CGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTACTGGCCGAGTTCGCTCGC 9198
Query 9335 CTGGGCTGGAAAC---CGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGTGCCG--- 9388
||||||||| | | | ||| || ||| || | || | | || |||| ||
Sbjct 9199 CTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCAAAG-CACCAGTGGCGGCT 9255
Query 9389 CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCGCCC 9447
| | |||| | ||| | || || | ||||| || | || || || | || |
Sbjct 9256 CCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCTCTCCGAGGCAAAGCGTTC 9314
Query 9448 CTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTGGCT 9507
|||| ||| |||||| ||||||| |||||||||| ||||||| || ||||| |||||
Sbjct 9315 CTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAACGCGTCGAATGGCT 9374
Query 9508 GGAC 9511
|||
Sbjct 9375 AGAC 9378
Score = 134 bits (148), Expect = 3e-27
Identities = 321/475 (68%), Gaps = 33/475 (7%)
Strand=Plus/Plus
Query 3262 GCATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGCGACTTCACCAAGC---TGCTCCC 3318
||| ||| |||| || |||| || |||| |||||| | ||||||| || |||
Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671
Query 3319 GACCGACGTCTATTCATG--CGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATG 3376
| |||||| ||||| ||||||||||| ||| || || ||||| | |||| | |
Sbjct 2672 GTGCGACGT--ATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACG 2728
Query 3377 CAC-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAAT 3435
||| ||| ||| | ||| |||||| |||||| || |||| || ||| || ||
Sbjct 2729 CACCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAG 2786
Query 3436 TCCG--GGATGGTCCACCGGCTTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGT 3493
||| || |||| || ||||||||| || | | || | || |||||||||
Sbjct 2787 GCCGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGT 2846
Query 3494 GACGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTA 3552
|||||| |||| || |||||| || | |||||||| |||||||| || ||||
Sbjct 2847 GACGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTT 2902
Query 3553 CATCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGATAT 3612
|||| ||| | || || | | ||| || | | ||| |||| |||
Sbjct 2903 TGCCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCAC---TAT 2950
Query 3613 GAAGAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAG 3672
|| | | ||||||||||||||||||| || ||| | |||||||| |||||| |
Sbjct 2951 GACCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAAC 3010
Query 3673 CCTGTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 3727
| ||| | || |||||| | ||| || |||||||||||||||||||||||
Sbjct 3011 GATTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065
Score = 87.8 bits (96), Expect = 4e-13
Identities = 209/310 (67%), Gaps = 12/310 (4%)
Strand=Plus/Plus
Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236
||||| | || ||||| ||||| | ||| | || || ||||| ||| ||| | ||
Sbjct 255 ATCCAACCGCCCGCCCAAACAACACGTCCCACAATCTCTAGGTCATTCAGGTTTTCTTTA 314
Query 237 GGGACGATCATT-TCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAA 295
| || |||| || | ||| ||| |||| | ||||| | | || ||| | |
Sbjct 315 GAAACCTTCATGGTCTG-ATAAGCCGCGTTTGCGCTGATAACTGCTACGCCACCGCCAAT 373
Query 296 GCGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGA---CTGC 352
| | |||||| ||||| || || ||||||||||||| ||||| ||||||| || |
Sbjct 374 CTGGCGTTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCTTC 433
Query 353 CGCGTCTTGGACCGTTG--ACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGC 410
| | || || | |||| ||| ||| || | | ||| || || ||||| | ||||
Sbjct 434 CCCTTCCAGG-CTGTTGCGACT----GTGGTCGATCAACACAGTGTCGCCATCACTCAGC 488
Query 411 AGAGGCTCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCC 470
| |||||||||||||||| | | ||||| || |||| | || || ||||| |||
Sbjct 489 ACCCCCTCCATAGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCC 548
Query 471 TTTTTTCGCA 480
| || ||||
Sbjct 549 TGCTTGCGCA 558
>seq8567
Length=29384
Score = 154 bits (170), Expect = 3e-33
Identities = 133/162 (82%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 25580 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25639
||||||||||||| |||||||||||||| || || ||||||||||||||||||||||
Sbjct 4898 CGATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGG 4839
Query 25640 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 25698
| ||||| ||||| || ||||| || | ||| |||||| | || ||||| ||||| ||
Sbjct 4838 CAGACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCT 4780
Query 25699 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 25740
||||||||| |||||| ||||| || || ||||| ||||||
Sbjct 4779 TCGGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGAT 4738
Score = 118 bits (130), Expect = 2e-22
Identities = 436/674 (65%), Gaps = 18/674 (3%)
Strand=Plus/Minus
Query 26527 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 26586
||| |||| |||||||||||||||| || || || |||||||| | | |||
Sbjct 4017 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCCCTGGAGGCCGTCAAAGGCAAG 3958
Query 26587 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 26646
| ||||| || || |||||| ||||| |||||||||||||||| || || |
Sbjct 3957 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 3898
Query 26647 AACATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 26704
||||||||||||||||| |||||||| | | || || || | ||| |||||
Sbjct 3897 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCA--CCAACG 3840
Query 26705 AACAGGGGCGCCTGAAGAAACAGACCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 26764
| || |||||| | ||| | | || ||| ||||| | || || |
Sbjct 3839 AGACCGGACGCCTGGCCGAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 3780
Query 26765 AACAACAGGATGCGCTGGCCCTCCAGGGCCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 26824
| |||||| || |||| || |||||||| || | || ||||||| ||| |
Sbjct 3779 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 3720
Query 26825 --CGCAACAGCGCCGCCTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCGCAGCA 26882
||| | | ||| || || | | ||||| | ||||| || || |||||
Sbjct 3719 ACCGCCAGAACGC--ACTCAACGGCGAACTGAACAGCCAGCAAGACCGGTTTGCTCAGCA 3662
Query 26883 GCGCCTGGACCTGGCGAGCCAGTATGGTGACGGCTCGCGAGGCATGAGCCTCGACGAGTA 26942
| ||||| |||| | |||| | ||| ||||| |||| || ||||
Sbjct 3661 GTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGTT 3602
Query 26943 CAA-CGACAAGCTCAAGGCGCT---GGAAGCGAACCATGCCGCGA-TGACCCAGCAGCTG 26997
||| ||| || | | ||||||| || |||||| | ||||| | |||| ||| |
Sbjct 3601 CAAGCGAAAATC-CCAGGCGCTCGCAGATGCGAACAAGGCCGCCACTGAC----CAGATC 3547
Query 26998 CAACGCAACTACGCCGACCTTCAGGCCGCCCAGGGCAACTGGGTCAACGGGGCGACGTCG 27057
| | ||||| || || | || |||||||||| | ||| || || |||||||||
Sbjct 3546 CGGCAGAACTATGCGGATGTGGAGAACGCCCAGGGCGATTGGACGAAGGGCGCGACGTCG 3487
Query 27058 GCGTTCGCTGACTACATCGACTCCGCCAGGAACAGTGCGGGCCAGACCTACGAACTGTTT 27117
|||| || | || | || || || | ||||| || ||||||||| | |||||
Sbjct 3486 GCGTGGGCCAATTATCTGGATTCGGCGAAGAACATCGCCGGCCAGACCAAGACCCTGTTC 3427
Query 27118 AGTAACGCCTTCTCCGGTCTGGAGGATGCCGTCGTTAATTTCGTGATGACTGGCAAGGCG 27177
| || |||||| | |||| ||||| || |||||||||| | | || || ||| |
Sbjct 3426 GGCAATGCCTTCAGCTCCATGGAAGATGCGGTTGTTAATTTCGCGCTTACCGGGAAGCTG 3367
Query 27178 TCGCTGGATGACTT 27191
||| | | ||||||
Sbjct 3366 TCGTTTGCTGACTT 3353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117704884860800
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