Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq26061 295 1e-73 seq19698 156 6e-32 seq334 131 2e-24 seq12390 123 4e-22 seq6706 122 1e-21 seq19010 111 2e-18 seq11597 107 3e-17 seq34427 100 4e-15 seq32274 86.0 9e-11 >seq26061 Length=1673 Score = 295 bits (326), Expect = 1e-73 Identities = 407/565 (72%), Gaps = 16/565 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| || |||||| || | | ||| |||||||||||| ||| | Sbjct 369 GAGCCGCTGCTGAAGGAGAACCCGTACAGGTACGTCTTGTTCCCCATCCAGCACCCGGAC 428 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCG---AGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832 || ||| | |||||| ||||||| ||||||| || ||||| | ||| ||||| || Sbjct 429 ATCTGGCAGATGTAC----AAGGCCGCGGAGGCCTCATTCTGGACGGTCGAAGAGGTTGA 484 Query 1455833 CCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 ||| | |||||| | |||||| | || | ||||| ||||| || ||||||| Sbjct 485 CCTGGCGGCCGACCTGAAGGACTGGGAGGGCCTCAACGACGGGGAGCGACACTTCATCAC 544 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||||||||| || || |||||| ||| |||||||| ||||||||| || | Sbjct 545 CCACGTCCTCGCGTTCTT-CGCCGCTTCCGACGGCATCGTCCTCGAGAACCTCGCTTCGC 603 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || ||||| || |||| | || ||||| || | || ||||||||||||||||| | Sbjct 604 GGTTCATGAACGACATCCAGATCCCCGAGGCCCGGTGCTTCTACGGGTTCCAGATCGCGA 663 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 ||||||||||||| || || || ||| || || |||||||| ||| ||||| || | Sbjct 664 TCGAAAACATCCATTCCGAGACGTACAGTCTGCTCATCGACACGTACATCAAGAACAACG 723 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| || ||| || || || ||| |||||||||| || | ||| ||||||| Sbjct 724 CCGAAAAAGACACGCTGTTCAAGGCGATCTCGACGGTGCCGTGCGTCACGAAGAAGGCCG 783 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCG 1456191 | ||||| || ||||||||| || || || ||| || || ||| ||||||||| Sbjct 784 AGTGGGCCATCAAGTGGATCGGCA------GCTCCGCCACGTTCGCGGAGAGGCTCGTCG 837 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 || || || || ||||||||||| ||||| || |||||| | ||||| ||||| | Sbjct 838 CGTTCGCAGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCTCGATCTTCTGGCTGA 897 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||| || || ||||| || || Sbjct 898 AGAAGCGGGGGCTGATGCCGGGGCT 922 >seq19698 Length=2970 Score = 156 bits (172), Expect = 6e-32 Identities = 298/434 (69%), Gaps = 4/434 (1%) Strand=Plus/Plus Query 332905 CTCGATGACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTT 332964 |||||||| | | ||| ||||||||| ||||| |||| || || || | || Sbjct 128 CTCGATGATCTTGCTCGAGTAGTTGCAGGCGAGGGCGAACCTGGTGGTGGTGCTGTGGAG 187 Query 332965 TTCCATGGTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAG 333024 |||||||| | || ||||| || ||| || || | | ||||| | |||||||| Sbjct 188 CTCCATGGTGCGCGTCAGCGCCTGCTGCGCCTCCTTGGTCATGGAGTCGACTTCGTCGAG 247 Query 333025 GATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGAT 333084 ||||||||| ||||| | ||| ||||||| ||| | ||| ||| | ||||| Sbjct 248 GATGATGATTTTGTGCCTGCCGGGCGGCAGCGTCACCTTCTTCTGCGCGAAGGACTTGAT 307 Query 333085 GATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTC 333144 | | |||||||| ||| || ||||||| |||||||||||| ||||||||| | || Sbjct 308 CTTGTCCCGCACGACCGCCAGCCCCCGCTCGTTCGACGCGTTGAGCTCGAGCACGCCTTC 367 Query 333145 GTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGC-GATGCTCGTGGTCTTGCCCG 333203 | | | | | | || | ||||||| || ||| ||||||||| |||||||| | Sbjct 368 GCTGAACTTCTCCGCGAGCAGCTCCCGCGCCA-GCGCGCAGATGCTCGTCGTCTTGCCGG 426 Query 333204 TGCCGGGCGGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGA 333263 |||||||||| || | | | | ||| |||||||| ||||| |||| || | Sbjct 427 TGCCGGGCGGCCCGGTGATGATCACGTTCGGCATGTTCCCGTCCCGCGCCACGACCCGCA 486 Query 333264 GGTAGGCAACGGCGTGCTCGTTGCCGACAATGTCGTCGA-GCACCATTGGGCGGTACTTT 333322 | || |||| || |||||||||||| | ||||||| || | || |||||||| Sbjct 487 GCCGCGCGACGGTGTCCTCGTTGCCGACCACCTCGTCGATGCTGC-GCGGCCGGTACTTC 545 Query 333323 TCGATCCATGGGAG 333336 || | ||| || || Sbjct 546 TCCACCCACGGCAG 559 >seq334 Length=12882 Score = 131 bits (144), Expect = 2e-24 Identities = 280/413 (68%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 2133423 CTGGGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCC 2133482 || |||||||| || | ||||||||||| || ||||| || | || | ||||||||| Sbjct 11822 CTCGGCGAGGACGTTTCCCGCGAGGGCCTGCTCGACACGCCAAAACGTGCCGCCAAGGCC 11881 Query 2133483 ATGGTGGAGCGCACGCGCGGCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTC 2133542 ||| | | | | ||||| || |||||| | || | | | ||| ||| | Sbjct 11882 ATGCAGTATCTCTGCCGCGGTTATGAACAGACCCTCGAAGAAGTCACCAACGGTGCCTTG 11941 Query 2133543 TTTGACGAGG-CGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTG 2133601 || | | | | | ||| |||||| ||| || || || || | ||| |||| Sbjct 11942 TTCAGCTCTGACAACAG-CGAAATGGTGCTGGTCAAGGACATCGAGTTGTACTCGCTGTG 12000 Query 2133602 CGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCG-GGCA 2133660 ||| |||||||||||||| || ||||||||||| ||||| | || | |||| | |||| Sbjct 12001 CGAACACCACCTGCTGCCGTTCATCGGCAAGGCTCACGTCGCGTATAT-CCCGAGCGGCA 12059 Query 2133661 AGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAG 2133720 | | | || ||| ||| || |||| |||||||| |||| | || |||| | || Sbjct 12060 AAGTGCTGGGCCTGTCGAAGGTCGCGCGTATCGTCGATATGTATGCCCGCCGCCTGCAGA 12119 Query 2133721 TACAGGAGGCACTCACGCGCCAGATCGCCGAGAGCGTGAGCCAGGTTACGGGCGCGCGCG 2133780 | ||||| |||| |||||||||||||| || ||||| || ||||| | | Sbjct 12120 TCCAGGAAAACCTCAGCCGCCAGATCGCCGATGCGGTCCAGCAGGTCACCGGCGCCCTGG 12179 Query 2133781 GCGTCGGCGTCGTCCTCGAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGTG 2133833 |||| | || || |||||| | |||||||||| || |||||||| ||| Sbjct 12180 GCGTTGCAGTGGTGATCGAGGCCAAGCACATGTGCATGATGATGCGCGGTGTG 12232 >seq12390 Length=60018 Score = 123 bits (136), Expect = 4e-22 Identities = 153/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 698574 TGGTCATAGTGGTAGGTCGCTGACTTGGAGAGGAGGAAAACATACTCGTGGGCGCGCGTC 698633 ||||| |||| ||| |||| |||||| || | |||| ||||||||||| || Sbjct 52158 TGGTCGTAGTAGTACTTCGCCGACTTGCTCAGCAAAAAAATGTACTCGTGGGCCTTAGTG 52217 Query 698634 GGACGGTCGCGCACGGACTCGGGC-TGGCAGTTGGGCTTGTGCCATATGATGTCGGAGCG 698692 |||||||| || ||| ||| | | | || ||||| ||||| |||||||| ||| Sbjct 52218 CAGCGGTCGCGGACACTCTCCGGCATTGGA-TTTGGCTTATGCCAAATGATGTCTTGGCG 52276 Query 698693 CAGGTACCAGCCGTCGGCCTGGAGGGCAAAGGCCACGCGCCACGGCAGCCCAATGAGGTC 698752 ||| |||||||| ||| |||| ||||||||||||| |||||| |||| || || | ||| Sbjct 52277 CAGATACCAGCCATCGTCCTGCAGGGCAAAGGCCAAGCGCCAGGGCATTCCCATCATGTC 52336 Query 698753 CTTGGCCTTGAGGCCCG--ACGGCGT 698776 ||||| ||||| || | ||||||| Sbjct 52337 CTTGGGCTTGAACCCAGGTACGGCGT 52362 >seq6706 Length=3834 Score = 122 bits (134), Expect = 1e-21 Identities = 277/408 (68%), Gaps = 13/408 (3%) Strand=Plus/Plus Query 2133440 GCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCG 2133499 ||||||||| | || ||||| || | ||| | |||||||||||| | | | | Sbjct 2223 GCGCGAGGGTTTGCTCGACACGCCAAAGCGTGCCGCCAAGGCCATGCAGTACCTGTGTCA 2282 Query 2133500 CGGCCATC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGG 2133558 |||| | ||| || ||||| || |||| ||| || || |||| | | | Sbjct 2283 CGGCTACGAGCA-GAACCTGGAAGAAATCGTCAACGGTGCGCTGTTTGCCTCCGACAACG 2341 Query 2133559 ACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGC 2133618 |||||||||||| | || || || | | || |||||||||| || ||||||| Sbjct 2342 ACGAGATGGTGATCCTCAAGGACATCGAGCTGTATTCGCTGTGCGAGCATCATCTGCTGC 2401 Query 2133619 CCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCA 2133678 ||||||||||||||||||| |||| ||| | || | |||||| | |||| ||| | Sbjct 2402 CCTTTATCGGCAAGGCCCATGTGGCCTATATTCCGACCGGCAAGGTGCTCGGCCTGTCGA 2461 Query 2133679 AGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGC 2133738 || | |||| |||||||||||||| || ||| | || | ||||| ||||||| Sbjct 2462 AGCTGGCGCGTATCGTCGACATGTTCGCCCGTCGCCTGCAGATCCAGGAAAACCTCACGC 2521 Query 2133739 GCCAGATCGCCGAGAGCGTGAGCCA---GGTTA--CGGGCGCGCGCGGCGTCGGCGTCGT 2133793 | | |||||||| || | ||| ||| | | ||| ||| |||||| | || || Sbjct 2522 GGGAAATCGCCGA---CGCCATCCAGACGGTGACCCAGGC-CGC-CGGCGTGGCGGTGGT 2576 Query 2133794 CCTCGAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGTGCGCAAAAC 2133841 |||| | | |||||||||| || |||||||| || || ||||| Sbjct 2577 GATCGAAGCCAAGCACATGTGCATGATGATGCGCGGTGT-CGAAAAAC 2623 >seq19010 Length=1041 Score = 111 bits (122), Expect = 2e-18 Identities = 268/390 (69%), Gaps = 13/390 (3%) Strand=Plus/Plus Query 165553 TGGTCATGCGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCA 165612 |||| || |||||||| |||||||| || ||||| ||| | || ||||| ||||||||| Sbjct 211 TGGTGATCCGCGCCTACGTCGAAAAACCCCGCACCACCATCGGTTGGAAAGGCCTGGCCT 270 Query 165613 GTGACCCCGATCTTGATGGCTCGTGCCGCC-TGGCTGATGGCCTTGATACA-TCGCGCCG 165670 ||||| || |||||| | | || | |||| | ||||| || | || || Sbjct 271 ACGACCCACGCCTGGATGGCA-GCGACGACATGGCCGCCGGCCT-GACCCTGTCCCGGGA 328 Query 165671 CCTGCTGCGTGATCTCGTCGTCGACGTCGACCAACCCGTGGCCGTCGAGTTTCTCAGTCC 165730 ||| |||| || | | || | | | || || || ||| |||| | || || Sbjct 329 ACTGATGCGGGAAATGCTG--CGCC-TGGGCCTGCCGGTCGCCACCGAGCTGCTGCAACC 385 Query 165731 TCTGGTGGCCCCCTATTTGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCAC 165790 ||| ||| ||| || | |||||| | | |||| |||| | || ||||||||||| Sbjct 386 GATGGCTGCCGGCTACTTCGATGACCTGCTGAGCTGGGTCGCCATTGGCGCGCGCACCAC 445 Query 165791 CGAGAGCCAGGTGCACCGCGAGATGGCGT-CGGCGCTGCCGC-TGCCCATTGGCTTCAAA 165848 ||| ||| | || ||||| ||||| |||| || | || ||||| | |||||||| Sbjct 446 CGAATCGCAGATTCATCGCGAAATGGCCAGCGGC-CT-CGGCATGCCCGTCGGCTTCAAG 503 Query 165849 AACAGCACCGACGGCAGCGTGGCGACGGCCCTCGATGCCGTGCGCACTGCCGCCCAGCCA 165908 ||| ||||||||||| ||||||| | ||| || ||| ||||| | ||||| || || Sbjct 504 AACGGCACCGACGGCGGCGTGGCCATCGCCTGTGACGCCATGCGCTCCGCCGCTCACCCG 563 Query 165909 CACACCTTTC-TCTGGGTCGACGGCCAAGG 165937 ||| | | | || | |||||| |||| || Sbjct 564 CAC-CGTCACTTCGGTGTCGACAGCCAGGG 592 >seq11597 Length=1682 Score = 107 bits (118), Expect = 3e-17 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 ||||||||||||||| | |||||| |||| | ||||||||||||||||| || ||||| Sbjct 192 CTGCTTGCCCATGGCGGATTGGTAGGTGTTCCTCGGCGCCTGGTTGTGGTCGGGGAACGG 251 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGT 1601472 |||||||||||||||| ||| || || | |||||||| |||| ||||| Sbjct 252 GATGATGGACGCGCAGATGCCGAGGATCATGGCCGGGTGGATCTCGCAATGCGT 305 >seq34427 Length=4033 Score = 100 bits (110), Expect = 4e-15 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969 |||||| || || || ||| | || || || || || || |||||| | ||||| Sbjct 3010 TTCACCCATGCAACCCCAACGTTGTTCAACGCAGGGACACCCAACCCGCAAATGTCGTCA 3069 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| || | | |||||||| ||| || |||||||| ||||| || ||||| ||| Sbjct 3070 TGCTTCCTTGTAGCCATGAAGGACGACTCTATCGAGGGGATCTACGAGACGCTGAAGACC 3129 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 |||||| | ||||| ||| | |||||||||||||| Sbjct 3130 TGCGCGATGATCTCGAAGACTGCCGGCGGCATCGG 3164 Score = 93.3 bits (102), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 260108 GGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCG 260167 || |||||||| || ||||||||||| || || ||||||||||| || |||||||||||| Sbjct 3565 GGAACCAACGGGCAATCCAACGGCCTCGTACCGATGCTTCGCGTGTTCAACGACACGGCG 3624 Query 260168 CGCTACGTCGACCA 260181 || ||||||||||| Sbjct 3625 CGTTACGTCGACCA 3638 >seq32274 Length=1597 Score = 86.0 bits (94), Expect = 9e-11 Identities = 108/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 1600499 TCGTCGACGGTGA---CGCCGCCAAAGGGCGTGCCGTCGCCCAC-ATAGCCCTCGCGGCA 1600554 |||| |||| ||| || || | || || ||| ||||||| | ||| |||| || ||| Sbjct 748 TCGTTGACGTTGAACCCGTCGACGAAAGGGGTGGCGTCGCCTTCGATA-CCCTGGCAGCA 690 Query 1600555 GGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGC 1600614 || |||||||| ||||||| || | || | || || ||||| |||||||||||||| Sbjct 689 CGCGACCTTGCCGAGGAGGGTTTCGAACAAGTGCCCGATCGTCATCCGCGACGGGATGGC 630 Query 1600615 GTGCGGGTTGATCACAATGTCGGGC 1600639 ||| ||||| || | ||||| ||| Sbjct 629 GTGGGGGTTCATGATGATGTCCGGC 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174009743708906