Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_026601.1 Length=37238 Score E Sequences producing significant alignments: (Bits) Value seq8416 356 6e-94 >seq8416 Length=35894 Score = 356 bits (394), Expect = 6e-94 Identities = 868/1291 (67%), Gaps = 48/1291 (4%) Strand=Plus/Plus Query 6986 TGCTCGCCGCTGAGGTGGCCCGCAGCAGCCAGACGAAAGCCGGCGAGGCAATCGGCATGA 7045 |||| ||||| || || ||| ||||| | || || ||| | || |||||||||| Sbjct 5330 TGCTTGCCGCCGAAGTTGCCGCCAGCAATAAAACCAAGGCCAGTCAGCGCATCGGCATGA 5389 Query 7046 GCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGTCGCCCTCGACGATCCGCG 7105 |||| | |||||||| ||||| |||||||||||| |||||| || ||| Sbjct 5390 GCCGCACAGCCGTCAGCTTGATCCTGGCCAACCGCTACAGCTCGCCCAGCACCTCTGGCG 5449 Query 7106 TCGAGCGCCGCGTCCTGGCCGCGCTGAGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGG 7165 ||||||| || || ||| | ||| | || ||||| ||| || ||| |||| | Sbjct 5450 TCGAGCGTCGGGTAATGGAAACCCTGGGGCGAATTGAATGCATCGCACTGGACGAGACCA 5509 Query 7166 TGACCTCGGTCGAGTGC---AGCGAGTACCTCCAGCGGCCGGCGCCGCTGAACAACCCCG 7222 | ||| | | | ||||| ||| |||| | | || || ||| ||||||| Sbjct 5510 TCACCACCGACCAGTGCCAAAGC---TACCGCGAAAAACCCGCACCGACCCACAACCCGC 5566 Query 7223 TCGCGATGCGCTGCTGGAAAGCGTGCCGCGCCTGTCCACGCAACCCGCA-TACCGCCCCC 7281 ||||||| |||| || |||| ||| ||| |||||| | | | || || Sbjct 5567 AGGCGATGCAGCACTGGCGCGCCTGCCAACACTGCCCAATCAACCCCGACTGCTGCAACC 5626 Query 7282 ATGA-AACGAG-AGGAACAAGGCCATGAGAACCGCATTGCCCTTGAAAGTCTTGACGCCT 7339 | || |||| | | | ||| || ||| | | || ||||||||| |||| || Sbjct 5627 AGGAGAACGCTCATGCTCGCCTCCACTAG--CCGTAAT-CCGTTGAAAGTCCTGACTCCG 5683 Query 7340 GACTTGGCCCTGAGCCTGCGCACCTTCAACGATGCCGCCCGGTTGCTCCAGCGCATGGGG 7399 ||||| | ||||||| ||||||| |||||||| | ||| | ||| Sbjct 5684 TCGCTGGCCGACCGTCTGCGCATTTTCAACGCCGCCGCCCGCAACTTGCAGGCCCACGGG 5743 Query 7400 GTTCGCCTGCATCGCCTGGAGCCGACAGAGGGGCGC---GTGACCATTGCCGCAGATGAC 7456 ||||| |||| || | | ||| | || || |||| || |||| || Sbjct 5744 ATTCGCGTGCAGGGCTTTCATCCGGCTGATAACCGATTGGTGATCAC-GCCG-----GAA 5797 Query 7457 GCCCGCCAGCTCCTGGAGAAA---GGCTAC-CTGATGGGTTTCCAGCGTGACGCCTCGGC 7512 ||| | |||| ||| || ||| || | || || | || | || ||| | |||| Sbjct 5798 GCCGGTCAGCGGCTGATCAACCTTGGCCACACCGAGGGCTATCAA-CGCCACGGCACGGC 5856 Query 7513 CGGCAGCACCCGTTATATCACCCGCTTCCAGGGCATCACCCTGGCCTGGAGCGAACCGAT 7572 ||| |||||||||| | | | ||||||||| | ||||||| ||| ||||||| || Sbjct 5857 CGGTAGCACCCGTTTCAACGTGCAGTTCCAGGGCGTGACCCTGGAATGGCGCGAACCCAT 5916 Query 7573 CAGC--TACCGCGACTTCGCCGGCAGCAAACCCGTAATTC---ACTGAAAAGGACTACC- 7626 ||| | || || | | || | | | | | | || ||||| ||| ||| Sbjct 5917 TAGCGCTTCC-CGTCCT-GCTGACTGGTCGCGACTGACTCTCCACTGA---GGA--ACCT 5969 Query 7627 --CCATGA----ACGACGTACATATCCCCGAGGGCTACCGGATGGACGGGCAAAAGCGCC 7680 | |||| || || || || ||||| |||||||| | |||| ||||||||| | Sbjct 5970 TGCAATGACACAACAACAAACC-ATTCCCGAAGGCTACCGCGTCGACGCGCAAAAGCGGC 6028 Query 7681 TGATCCCGGAGGCCACCATCAAGCCCGTTGACCTGGCCCGCGACCAGTTGGTTATGGAGC 7740 |||||||||| ||||| || | ||||||| || ||| |||| | | | Sbjct 6029 TGATCCCGGAAAGTCTGATCAAACCTATAGACCTGGAGCGGGACGCCCTGGTACTTGGCC 6088 Query 7741 TGGTGGGCAAGGCCAAGGCAGTCCAGAGC-GAGCTGGCCCGCTTCAAGGCTTCCGCGTTC 7799 |||| | || ||| || | |||| | | |||||| |||||||| || || ||| Sbjct 6089 TGGTTGAAAAAGCCCGCGCTG-CCAGCGATGTGCTGGCGAAGTTCAAGGCCTCGGCCTTC 6147 Query 7800 GGCGACATCGACGCTTTCGTCGATCTGTCGGTCGAGCAGTACGGCACCAAGCTTGGAGGC 7859 || || ||||| || || ||||| || | |||||||||||| || || | || ||| Sbjct 6148 GGTGATATCGAAGCCTTTGTCGAACTCAGTGCTGAGCAGTACGGCGCCCAGATCGGTGGC 6207 Query 7860 AAGAAAGGGAACGTCTCCCTCCTGAGCTTCGATGGCCGCTACATGATCAAGAAAGCGATC 7919 ||||| || || ||| ||| | ||||||||||| || | || ||||| | || || Sbjct 6208 AAGAAGGGAAATGTCAGCCTGATCAGCTTCGATGGGCGTTTCAAGATCATGCGCGCAGTC 6267 Query 7920 CAGGAAACCATCCAGTTCGACGAGCGTATCCAGGCCGCCCGCGAGCTGATCGAGGAATGC 7979 ||||||| |||| |||||||| || ||||||| || || | |||| || || ||| Sbjct 6268 CAGGAAAGCATCGCTTTCGACGAACGCCTCCAGGCTGCGCGTGCATTGATTGATGAGTGC 6327 Query 7980 CTTCGCGACTGGACCCAGGGCGCCAGGCCCGAAGTGGTCACCCTGGTAACCAACGCTTTC 8039 || |||||||||||| || || | |||||||||||||| ||||||| | || || Sbjct 6328 CTGCGCGACTGGACCGCCGGGGCACGTCCCGAAGTGGTCACGCTGGTAAATGATGCCTTT 6387 Query 8040 CGCACTGACACGAAGGGCGAAATCCGTACCGCCCGAGTGCTCGCCCTGCGCCGCCTGGAC 8099 || |||||| |||||||| ||||| || ||||| || || || ||||||| |||| Sbjct 6388 CGGACTGACCAAAAGGGCGACATCCGCACAGCCCGCGTCCTGGCGTTGCGCCGTATGGAA 6447 Query 8100 ATCCAAGACGAGCGCTGGCTGCGAGCCATGAATGCGATTGGCGACGCCTGCCAGGCGGTG 8159 ||| || || ||||||| ||| |||||| | || ||||||||||||||||||| | | Sbjct 6448 ATCACCGATGAACGCTGGCAGCGCGCCATGCAGGCCATTGGCGACGCCTGCCAGGTGATC 6507 Query 8160 GGTTCCAAGGCCTACATCCGCGTCTATGAACGGGTCGGCGACAGCGACCAGTACCAGCAG 8219 || |||||| ||||||||||||| ||| | ||||| || || | |||||| ||| | | Sbjct 6508 GGCTCCAAGTCCTACATCCGCGTGTATCAGCGGGTTGGTGATACCGACCAATACGAACCC 6567 Query 8220 ATCAGCCTCGATATGGCGGGGGTGTGATATG 8250 ||||||||||| || || || |||||| ||| Sbjct 6568 ATCAGCCTCGACATTGCAGGTGTGTGAAATG 6598 Score = 257 bits (284), Expect = 4e-64 Identities = 295/394 (75%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 1437 GTAAAGCCGGCGCGGGG-GCTTGAACATGGCCCGCCGCAAAGACGATCGAACGCTGGACA 1495 ||||||| ||| || | || |||||||| || ||||| || |||| | |||| Sbjct 1429 GTAAAGC-GGCAAGGAGTGCCTGAACATGCGTAACCAAAAAGATGACAGAACATTAGACA 1487 Query 1496 TCTTCGATGTTCCGCAGCCGGCCCTCGCTATACCTGGTGAGTGCAACTACGCCGCTCAAG 1555 ||||| |||||||||||||| || ||||||| ||| | ||||||| ||||| || | Sbjct 1488 TCTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGTCACGGCAACTATGCCGCCCAGG 1547 Query 1556 TCAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCG 1615 ||||||| |||||||||||| | || || | | |||| | ||||| || ||| | || | Sbjct 1548 TCAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGACTTGGACCGCTATGAGATTGCGG 1607 Query 1616 CCCGGATGTCGCGCCTGTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGA 1675 | || ||||| ||||| || ||||| ||||| |||||||||||| | ||||||||||| | Sbjct 1608 CTCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAGAACATGTTAGACGCCTGGTCAA 1667 Query 1676 GTCCCGCCCGAACTGATCACAACTTGCCTTTCTACCGCGCCGCCCTTCTGGAGGACGTCT 1735 |||| ||||| | ||||||||| | ||| | || || || || | |||||||| |||| Sbjct 1668 GTCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGAGCTGCTTTGCTGGAGGAAGTCT 1727 Query 1736 GCGCGAGCCATCTGCTGACCAACTGGCTGGTCGATGTACGTGGCGGCCGCGTGGCTTACG 1795 | || |||||| | ||||| || |||| || | | || || ||||| || ||||| | Sbjct 1728 GTGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTGCGCGGTGGCCGGGTCGCTTATG 1787 Query 1796 GCCGCGATGCACTGCTCGCCGAACTGGGCCGCCT 1829 | ||||| || ||| ||| ||| | || ||||| Sbjct 1788 GGCGCGAGGCTCTGGACGCGGAAATAGGTCGCCT 1821 Score = 152 bits (168), Expect = 1e-32 Identities = 127/152 (84%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 9315 CACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 9374 |||| ||||||||||||||||| || | |||||||||||||||||||||| ||||||||| Sbjct 8684 CACTAAGCGAAACCGCCCCGGCGTG-CTGGGACGGTCTGCCGGACGTGGTTGTCCGGTAC 8742 Query 9375 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCG 9432 ||||||||||||||||||||| ||||| ||| | |||| ||||| ||||||||| Sbjct 8743 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCCAAACCCGCCTGGCA 8800 Query 9433 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 9464 || ||||| |||| || |||| ||||||| Sbjct 8801 CGCGAACGTAAACGTGCCCAGCGTAAGCGCGA 8832 Score = 141 bits (156), Expect = 2e-29 Identities = 289/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 210 ATCCAGCGGCCTGCCCATACCACGCGACCAATGATGTCGATTGCCTCTAGGTCTTGCTTG 269 ||||| | ||| ||||| || || || || | || || | | | |||| || || Sbjct 255 ATCCAACCGCCCGCCCAAACAACACGTCCCACAATCTCTAGGTCATTCAGGTTTTCTTTA 314 Query 270 GACACGTACATCGTCTGGTAGGCCGAATTAGCGCTAATGATCGCTAG---ACCGCCATTG 326 || || | ||| ||||| || |||| || ||||| || | |||| ||||||| Sbjct 315 GAAACCTTCATGGTCTGATAAGCCGCGTTTGCGCTGATAACTGCTACGCCACCGCCA--- 371 Query 327 ATTTGCCGCTGGATTCGCTTGGCGTATAGGTGGTCATCCAACCGAATGACGTAGATAG-- 384 || || || || | ||||||||||| || ||||||||||| ||||| |||||||| | Sbjct 372 ATCTGGCGTTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCT 431 Query 385 -CCTCGTCGCGGACCTCGCCGCAGCTGTGGTCAATCATCACCGTATCACCATCGCTCAAC 443 || | || || || | || |||||||| |||| ||| || || ||||| |||| | Sbjct 432 TCCCCTTCCAGG--CT-GTTGCGACTGTGGTCGATCAACACAGTGTCGCCATCACTCAGC 488 Query 444 AGCGGCTCCATTGAGTCACCGCCGATGCGAACGGCTGACATATTCGCTATCTCCAGACCT 503 | | |||||| ||||||||| | | || | || || | |||| ||||| || Sbjct 489 ACCCCCTCCATAGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCC 548 Query 504 TGCTTCCGCAAGCTGTAGCGAGTGAACGCCAGCTTGGCCAAGGTCCGCGCGCCCTCCATC 563 ||||| ||||| ||| || || ||||| | | | ||| || ||||| || Sbjct 549 TGCTTGCGCAATGAGTAAGTGGTAAAAGCCAGGTGCGTAAGAACCCGAGCCCCCTCTGTC 608 Query 564 CAGGAACCGTGGCCAGCACTCACCCGCGCGTCGTAGAGGGGTACGTAGGCGTAGGTGTCA 623 || | ||||| || ||||| || |||||||| ||||| || ||| ||| ||||| Sbjct 609 CATGCCCCGTGACCGGCACTGCAACGAGCGTCGTAAAGGGGGACATAGCTGTATTTGTCA 668 Query 624 TCCTC 628 ||||| Sbjct 669 TCCTC 673 Score = 122 bits (134), Expect = 2e-23 Identities = 316/473 (67%), Gaps = 29/473 (6%) Strand=Plus/Plus Query 3332 GCATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGCGACTTCACCAAGCTGCTG---CC 3388 ||| ||| |||| || |||| || |||| |||||| | ||||||| || || Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 3389 GACCGACGTCTATTCCTGCGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 3448 | |||||| | || ||||||||||| ||| || || ||||| | |||| | ||| Sbjct 2672 GTGCGACGTATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACGCA 2730 Query 3449 C-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTC 3507 | ||| ||| | ||| |||||| |||||| || |||| || ||| || || | Sbjct 2731 CCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAGGC 2788 Query 3508 CG--GGCTGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCTTGCGCGA 3565 || || |||| || ||||||||| || | | || | || ||| |||| || Sbjct 2789 CGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGTGA 2848 Query 3566 CGCC-TGCACCAAGGGCGGCATCCCGGCCATCTTCTACGTTGACAACGGCTCGGGCTACG 3624 |||| |||| || |||||| || | ||||||||||||||||| || |||| | Sbjct 2849 CGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTTTG 2904 Query 3625 TCAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGATATGA 3684 |||| ||| | || || | |||| || | | ||| |||| ||||| Sbjct 2905 CCAACGACACCGTACG---TGAAGTAGTCGACCGTCTCGGC------GGCA---CTATGA 2952 Query 3685 AGAACAGCCTGCCATACAACAGCCAGGCGCGGGGCGTGATCGAGCGCGTCCACCAGAGCC 3744 | | |||| |||||||||||||| || ||| | || ||||| |||||| | Sbjct 2953 CCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAACGA 3012 Query 3745 TGTGGATTCGCGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 3797 | ||| | || |||||| | ||| || ||||||||||||||||||||||| Sbjct 3013 TTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 109 bits (120), Expect = 1e-19 Identities = 221/322 (69%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 9711 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9770 || ||||||||||||||| | || || |||| ||||| ||||| ||||| ||| | Sbjct 9061 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTG 9120 Query 9771 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9830 | ||||| || | ||||| |||||||| || || ||| |||||||||| | ||| Sbjct 9121 GGCCGCGTGGCAGATGTGCGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTA 9180 Query 9831 CTTGTCGAACTCCAGCGCCTGGGCTGGAAAC---CGAAGAGCAACCGGCAGGGCCGGGCG 9887 || | ||| || |||||||||||| | | | ||| || ||| || | || Sbjct 9181 CTGGCCGAGTTCGCTCGCCTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCA 9238 Query 9888 ACGCCAAAAGTGCCG---CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCT 9943 | | || |||| || | | |||| | ||| | || || | ||||| || | || Sbjct 9239 AAG-CACCAGTGGCGGCTCCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCT 9296 Query 9944 GGCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGT 10003 || || | || ||||| ||| |||||| |||||||| |||||||||| |||| Sbjct 9297 CTCCGAGGCAAAGCGTTCCTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGT 9356 Query 10004 CGAGCGGGTCGAGTGGCTGGAC 10025 ||| || ||||| ||||| ||| Sbjct 9357 CGAACGCGTCGAATGGCTAGAC 9378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118984285783200