Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq29849 172 6e-38 seq21875 118 1e-21 seq34640 100 3e-16 seq2393 95.1 1e-14 >seq29849 Length=3363 Score = 172 bits (190), Expect = 6e-38 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 ||| || ||||||||||||| ||| ||||| || || || |||||||||||||||||||| Sbjct 1042 CTTACCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTC 1101 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | ||| |||| || ||| ||||| || || ||||| || ||||| |||||||| || || Sbjct 1102 GGCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGG 1161 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 ||| |||||||| || || || || || || || || | |||||| || || Sbjct 1162 CGGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTC 1221 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || |||||||| || || || ||||| | || || || ||||||||||||||| Sbjct 1222 GACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTTG 1276 >seq21875 Length=4161 Score = 118 bits (130), Expect = 1e-21 Identities = 173/242 (71%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||||| ||| || ||||| || ||||| ||||| || ||||||||||| ||| Sbjct 217 CCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 276 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | || ||| |||||||| || || || || |||| | |||||| |||||||| Sbjct 277 AGCGTTCTG-CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGG 335 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || || || || | |||||| || ||||| Sbjct 336 GATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCAC 395 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-----TTTGTTT 134720 || || || || || || ||||| | || || |||||||| ||||| ||||||| Sbjct 396 CTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTTCCTTTGTTT 455 Query 134721 TT 134722 || Sbjct 456 TT 457 >seq34640 Length=3269 Score = 100 bits (110), Expect = 3e-16 Identities = 166/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 134479 TTGCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGT 134538 |||||| || || | || || | ||| ||||| ||||| || ||||| || ||||||| Sbjct 1110 TTGCCT--CCACCACGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 1167 Query 134539 AGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGAT 134598 |||| ||| || ||| || ||||| || || || || ||||| |||||||| | Sbjct 1168 AGTCCGCAAGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGT 1227 Query 134599 CGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACG 134658 | ||||| ||||| || || || || || || || || || | ||||| || Sbjct 1228 CAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCG 1287 Query 134659 ATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || || ||||| || || || || || || | || |||||||| || ||||| ||| Sbjct 1288 ACTCGACCTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTTG 1346 >seq2393 Length=4323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | || ||||| || || || ||||| || ||||||||||| ||| Sbjct 1929 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1988 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | || | || || | ||| ||||||||||| || | || ||||| || ||||| Sbjct 1989 AGAGTCCTGCCA-TCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 2047 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || ||||| || || || || | || || ||| ||||| Sbjct 2048 GATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCAC 2107 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || |||||||| || || || || | ||| |||||||| || ||||| || Sbjct 2108 CTCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAACGAAGATCTGCATCTT 2158 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | || ||||| || || || ||||| || ||||||||||| ||| Sbjct 897 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 956 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | || | || || | ||| ||||||||||| || | || ||||| || ||||| Sbjct 957 AGAGTCCTGCCA-TCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 1015 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || ||||| || || || || | || || ||| ||||| Sbjct 1016 GATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCAC 1075 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || || || || || | |||||| || || || |||||| Sbjct 1076 CTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATT 1124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505149409160760