Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5074 150 2e-31 seq26061 127 3e-24 >seq5074 Length=2057 Score = 150 bits (166), Expect = 2e-31 Identities = 471/714 (66%), Gaps = 34/714 (5%) Strand=Plus/Minus Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 |||||||| | ||||||| || ||||| ||||||||| || | |||| ||||| || Sbjct 1553 ATTAACTACTGGAAATTCTCCCGATAATACTCTACGAAGATATACATTAGAAGTATAAGG 1494 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| | | |||| ||||||||||| || || ||| ||||| || ||||| ||||| | Sbjct 1493 TTCGAAACATTCGTTATTTCCCAGGATAATAGAAGTAGATGCTGTGGGCATTGGTGCGAT 1434 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 ||||||||||||| |||| |||||| | |||||| || | | | || | || || | Sbjct 1433 CAATAAACTATTTTTAAGTCCATGTTTCTTGATTTCATTTCTAATAT-TATCAAACTCTT 1375 Query 68889 AAGA-TCAGATGGTACAACATTCCAAAGATC-GTATTGTAGAATTCCGTTACTTGCATAT 68946 ||| ||||| || || | | |||| | | || || || | ||| | Sbjct 1374 TAGATTCAGA--GT------TTGC-ATGATCAGGAGCCAAG-ATACCTATCGATGCCATT 1325 Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||| ||| ||| || | || ||||| ||| | | ||||| Sbjct 1324 GATCCTATGAATGACGAATACCATCCATCGATCTTTGCAAGTTCGCAAGATTCTTCTAAA 1265 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || ||| ||| | ||| || ||| || || | ||||||| || |||| Sbjct 1264 GCTGCGAGATATATTTCTCTGAATATACTCTCGTTTAGTTTGAATGCTTCTGGAGAATCG 1205 Query 69067 AATGGATAATGTAAAAGAAT-AAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 ||||| || | || || | ||||| ||| || ||||| ||||| || || || || || Sbjct 1204 AATGG-TAGTCCAAGAGCTTGAAATGTATCAGCTAATCCTTGAACACCGATTCCTATGGG 1146 Query 69126 TCTATGTCTCTTATT--TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 | ||| || ||| | | ||| |||||| | |||||||| | |||| ||| Sbjct 1145 ACGATGCTTCAAATTACTTAGCTT--GGCTTCTTTTGTCGGATAATATGTCCTATCGATA 1088 Query 69184 ATTTTATTAAGATTTCGGACTACTACTTTAACCACGT---CCTTTAGTTTGAGAAAATCA 69240 | |||||| | ||||| |||| |||||| ||||| | | | ||| | ||||| Sbjct 1087 ACTTTATTCAAATTTCTCACTAGTACTTTTACCACTTTTCTCAATGGTTCG---AAATCG 1031 Query 69241 AATCGTCCA---TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGC- 69296 ||| | | ||| |||||| || ||||| | | || |||||||||||||| Sbjct 1030 AATTCACTATTTTCTCCCACAAACTTAGGAAGTGCAATACTCGCAAGATTACAAACTGCA 971 Query 69297 --TACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATA 69354 | | || |||| | | | | ||| || |||||||||| |||||| | |||| Sbjct 970 GTTTCTTCCGGAGAA---GAAAACTCTATAATTTCTGTACATAAGTTACTAGAACGGATA 914 Query 69355 GTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 || |||||||| | || ||||| || | || || || ||| | |||||| Sbjct 913 GTTCCCAGATTATTTTGGTTACTTCTTCTATTCGCGGTATCTTTGAACAGAATA 860 >seq26061 Length=1673 Score = 127 bits (140), Expect = 3e-24 Identities = 412/626 (66%), Gaps = 13/626 (2%) Strand=Plus/Minus Query 39340 AACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAA 39399 |||||| || ||||| || || || ||||||| || || || |||||||| || || Sbjct 1259 AACGCGCTTTTCGAAGAAGTTTGTCTTGCCTTGCAGGGAGATGAGCTCCATGAAGTCGAA 1200 Query 39400 CGGATTAGTTGCATTATAtttttttttAAATCCTA-ATTCTGAAATCAATCTATCTGCA- 39457 ||| || | | || || | || | | || | | || || || || || ||| Sbjct 1199 CGGGTTCGCCGTGTTGTAGTACTTCTCGTAGCCGAGAGTCACGAA-CAGTCGGTC-GCAC 1142 Query 39458 ACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGA 39517 || || || ||||| | ||||| || | ||||| || || || || || || || Sbjct 1141 ACGAACTCGATGTACTTCGCCATCAGGTCGCTGTTCATCCCGATCAGCTTGACCGGCAGT 1082 Query 39518 GCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA--TCGATGTTAC-- 39573 || ||||||| |||||| || |||||| |||| ||||| | | | || | || Sbjct 1081 GCGTCCGTTACAAACTCCTTCTCGATGGCTACAGCCTCCGCAAGCAATTCCACCACACGC 1022 Query 39574 TACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATG 39633 | ||| | | || || | | | | || | | | |||||||||||| || || Sbjct 1021 TCCCTGCTGAGGCG-TGTGTACTCGAGCTTGTTGTAGAGCAGGCAGGCGAAGTCGCAGTG 963 Query 39634 TAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACG 39693 | |||||| |||| || | ||||| | || || || || ||||| || || || Sbjct 962 CATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGCCCCGGCATCAGCCCCCG 903 Query 39694 CTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGAAGATGCCTTCTACTGCTG 39752 ||| || ||||| || || | |||| || || || || ||||||||||| || || |||| Sbjct 902 CTTCTTCAGCCAGAAGATCG-AGCAGAACGACCCGGAGAAGAAGATGCCCTCCACCGCTG 844 Query 39753 CAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTATGTATCCACTTCTGTGCCCAA 39811 | || || || || ||||| || ||| || | | |||||||| ||||| Sbjct 843 CGAACGCGACGAGCCTCTCCGCG-AACGTGGCGGAGCTGCCGATCCACTTGATGGCCCAC 785 Query 39812 TCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCA 39871 || || |||||| | || || |||| || || || || || || | |||||| Sbjct 784 TCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCTTGAACAGCGTGTCTTTTTCG 725 Query 39872 TCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCA 39931 | | | || | || || || || | |||||| ||| | || |||||||||||||| Sbjct 724 GCGTTGTTCTTGATGTACGTGTCGATGAGCAGACTGTACGTCTCGGAATGGATGTTTTCG 665 Query 39932 ATCGCCATCTGAAATCCGTAAAAACA 39957 ||||| ||||| || ||||| || || Sbjct 664 ATCGCGATCTGGAACCCGTAGAAGCA 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686570385793320