Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq26061 136 5e-27 seq37857 96.9 4e-15 >seq26061 Length=1673 Score = 136 bits (150), Expect = 5e-27 Identities = 389/581 (67%), Gaps = 18/581 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 |||||| ||| ||||| ||||||||||||||||| || | || | ||| |||||| Sbjct 1267 TAGTCCGAAACGCGCTTTTCGAAGAAGTTTGTCTTGCCTTGCAGGGAGATGAGCTCCATG 1208 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || |||||| | ||| | | | || | | | | | || || || Sbjct 1207 AAGTCGAACGGGTTCGCCGTGTTGTAGTACTTCTCGTAGCCGAGAGTCAC-GAACAGTCG 1149 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||| ||||||| | |||| ||| |||||| ||||| || || Sbjct 1148 GTCGCACACGAACTCGATGTACTTCGCCATCAGGTCGCTGTTCATCCCGATCAGCTTGAC 1089 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG--ATGGCG 129964 || || |||||| | ||| ||||||| ||| | ||||| ||| ||| | || | Sbjct 1088 CGGCAGTGCGTCCGTTACAAACTCCTTCTCGATGGCTACAGCCTCC-GCAAGCAATTCCA 1030 Query 129965 TGAATGGTCTCCGTGCC-AGGTCTAT-TGCGCAAAGTC-TTGAAGAGTTCCACGGCAAAC 130021 | | |||| ||| ||| | | | | | | | ||| |||| ||| || Sbjct 1029 CCACACG-CTCCCTGCTGAGGCGTGTGTACTCGAGCTTGTTGTAGAGCAGGCAGGCGAAG 971 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | |||||||| ||||||||| || |||| ||| ||| || ||||| Sbjct 970 TCGCAGTGCATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGCCCCGGCATC 911 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || ||||||||||||| |||||| |||| || || || || ||||||||||| |||||| Sbjct 910 AGCCCCCGCTTCTTCAGCCAGAAGATCGAGCAGAACGACCCGGAGAAGAAGATGCCCTCC 851 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 130201 || |||||||| | ||| | ||| || || | | ||| | | | |||||| Sbjct 850 ACCGCTGCGAACGCGACGAGCCTCTCCGCGAACGTGGCGGA---GCTGCCGATCCACTTG 794 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCG-CTTCAA-AGAGTT 130259 || ||||||| ||||| ||| || ||||| || ||| ||||| ||| || || || Sbjct 793 ATGGCCCACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCTTGAACAGCGTG 734 Query 130260 CCTTCTTTTCTG-ATGGATCTTTGATGTACTTATCTATGAG 130299 || ||||| | | | || ||||||||| | || ||||| Sbjct 733 TCT--TTTTCGGCGTTGTTC-TTGATGTACGTGTCGATGAG 696 >seq37857 Length=4355 Score = 96.9 bits (106), Expect = 4e-15 Identities = 255/380 (67%), Gaps = 16/380 (4%) Strand=Plus/Plus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 || || ||| ||||| || || || || || | ||| ||| || | || ||||| Sbjct 3204 GACCTGACGGTCAAAACGGCCCGGACGCAGCAAAGCGGGGTCGAGTACGTCTGGACGGTT 3263 Query 14116 CGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAG 14173 || || ||||| || | |||||| ||| || || |||||||| ||||||||| || Sbjct 3264 GGTTGCGGCGATCACGATGATGCC-GTCGTTCATT-TCAAAGCCGTCCATCTCAACCAGC 3321 Query 14174 AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTT 14231 | || || | || || || || ||||||| | || ||| || || | || | Sbjct 3322 AACTGGTTAAGCGTCTGCTCACGCTCATCATGACC--GCCGCCCATGCCGGCGCCACGAT 3379 Query 14232 GCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG---TTGATTTTCACGGG 14288 | ||| |||||||| |||||||||||||| | ||| || || || || | || Sbjct 3380 GGCGACCAACGGCGTCGATTTCATCGATGAAGATGATGCACGGAGCGTGCTTCT---TGG 3436 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | ||| || ||||| || || | ||||||| ||||| || ||||| || || || | Sbjct 3437 CCTGTTCGAACATATCGCGAACACGGCTGGCACCTACACCGACGAACATTTCGACGAAGT 3496 Query 14349 TGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGG 14407 || ||||| || | || ||| || || || | ||| || || ||||| ||| | Sbjct 3497 CGGAACCGGAA-ATGGTGAAGAAAGGTACTTTGGCTTCGCCGGCAATGGCCTTGGCCAAC 3555 Query 14408 AGGGTCTTCCCCGTCCCTGG 14427 ||||| || || || ||||| Sbjct 3556 AGGGTTTTACCGGTACCTGG 3575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618130520168280