Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1662 132 1e-25 seq21875 107 6e-18 >seq1662 Length=13521 Score = 132 bits (146), Expect = 1e-25 Identities = 223/323 (69%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 349566 TGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTAC 349625 ||||||||| ||||| |||| | |||| ||| || | | || || ||||| || | Sbjct 8984 TGAAGGAAACAGCTGAGGCATTTGTAGGCAAAAAGGTGAAAAAGGCGGTCATTACAGTTC 9043 Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685 | ||||| ||||| |||| |||||| || |||| ||||||| | || ||| Sbjct 9044 CTGCCTACTTTAACGATGGCCAGCGAGAACGCACCAAAGCTGCTGGCGAAGTCGCCGGGC 9103 Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745 | | ||||| | | || || ||||| || || |||||| | ||||| || || |||| Sbjct 9104 TGCAGGTTCTGCGTGTCATCAACGAACCAACAGCCGCAGCATTGGCATACGGTCTGGATA 9163 Query 349746 AAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATG 349805 | | || |||| | ||| ||| | | |||| || | ||||||||||||||||| | Sbjct 9164 AGAAGAATGACGACGAAGTCAATGTATTGGTTTTCGACCTTGGTGGTGGTACTTTTGACG 9223 Query 349806 TATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACAC 349865 | || | | |||| | || ||||| ||||| ||| |||| || || || || | Sbjct 9224 TTACAGTTGTCGGTATTGACAACGGCATTTTCGAAGTGAAATCAACAGCCGGAGACACGC 9283 Query 349866 ATCTTGGTGGAGAAGATTTTGAT 349888 | ||||||||| |||| || ||| Sbjct 9284 ACCTTGGTGGACAAGACTTCGAT 9306 >seq21875 Length=4161 Score = 107 bits (118), Expect = 6e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | ||| | || || || || || ||||| || || || || || || | Sbjct 217 CCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 276 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | |||| || || || || || ||||| || ||||| || | ||||| || || || Sbjct 277 AGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGG 336 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || ||||| || |||| || ||||| || |||| || || || || Sbjct 337 ATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACC 396 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| ||||| || || || || ||||||||||| Sbjct 397 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514489228253639