Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq34427 138 1e-27 seq26061 138 1e-27 >seq34427 Length=4033 Score = 138 bits (152), Expect = 1e-27 Identities = 132/168 (79%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 79429 CGCAT--CTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGT 79486 ||||| ||| || | ||| ||||| | || | ||| || || | |||||| |||| Sbjct 3748 CGCATACCTCTTCTTTGCCGTGGTTGCGCTTGAGGTGGAGGAACTCGAAGATGTCCGCGT 3689 Query 79487 GCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGT 79546 |||||||||| || ||||||||||| |||||||| |||||||| ||||| |||| ||||| Sbjct 3688 GCCACGGCTCGAGGTAGATGGCGAAGGAACCCTTTCGCTTGCCTCCGCCTTGGTCGACGT 3629 Query 79547 ACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 | || ||||||| |||||| || || ||||| || |||| ||||| || Sbjct 3628 AACGCGCCGTGTCGTTGAACACGCGAAGCATCGGTACGAGGCCGTTGG 3581 Score = 136 bits (150), Expect = 4e-27 Identities = 194/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 79647 GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTA 79706 ||| || |||||||| |||| ||| ||||| |||||| ||| ||||||||||| Sbjct 3171 GTGTATGCCGATGCCGCCGGCAGTCTTCGAGATCATCGCGCAGGTCTTCAGCGTCTCGTA 3112 Query 79707 GATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTT 79766 ||| |||||||| |||||||||||||| || || |||||||| |||||| || ||||| Sbjct 3111 GATCCCCTCGATAGAGTCGTCCTTCATGGCTACAAGGAAGCATGACGACATTTGCGGGTT 3052 Query 79767 GTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG-AAGAACTTTTGGCTCATCA 79825 | || || |||||||| | || || || || || ||| || || || ||| | || Sbjct 3051 GGGTGTCCCTGCGTTGAACAACGTTGGGGTTGCATGGGTGAAATCACCGTT-GCTGAGCA 2993 Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885 | | |||||| ||| ||| || || ||| ||||||||| | | |||||||| Sbjct 2992 GCTTGTACGTTTCCACGACCTTTTCGATGTTCTCGAAGTGGATGCCAATGGAGACGCGCA 2933 Query 79886 TGAAGAGGTACTG-GGGCGTCTCGCCGA 79912 | | | || ||| |||||| ||| ||| Sbjct 2932 TCAGCATGTGCTGCGGGCGT-TCGACGA 2906 Score = 131 bits (144), Expect = 2e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 19394 GGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCC 19453 || || ||||| | || |||| |||| || ||||| ||||| |||||| ||||||| Sbjct 3565 GGAACCAACGGGCAATCCAACGGCCTCGTACCGATGCTTCGCGTGTTCAACGACACGGCG 3624 Query 19454 AGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCA 19513 | |||||| |||| || || ||||| || ||||| || |||||||||||||||||||| Sbjct 3625 CGTTACGTCGACCAAGGCGGAGGCAAGCGAAAGGGTTCCTTCGCCATCTACCTCGAGCCG 3684 Query 19514 TGGCACGCGGACGTCATGGATTTCCTC 19540 |||||||||||| || | || |||||| Sbjct 3685 TGGCACGCGGACATCTTCGAGTTCCTC 3711 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 ||||| || || || || || | |||||||| || || ||||||||| |||||| Sbjct 3010 TTCACCCATGCAACCCCAACGTTGTTCAACGCAGGGACACCCAACCCGCAAATGTCGTCA 3069 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || ||||| || || |||||||| ||| || ||||| |||||||||||||| ||| Sbjct 3070 TGCTTCCTTGTAGCCATGAAGGACGACTCTATCGAGGGGATCTACGAGACGCTGAAGACC 3129 Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 |||||| ||||| ||| |||| || ||||| || ||| Sbjct 3130 TGCGCGATGATCTCGAAGACTGCCGGCGGCATCGGCATACAC 3171 >seq26061 Length=1673 Score = 138 bits (152), Expect = 1e-27 Identities = 342/511 (67%), Gaps = 20/511 (4%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 ||||||||| | ||||| ||| ||||||| || | ||||||||||| ||||| ||| Sbjct 459 TCATTCTGGACGGTCGAAGAGGTTGACCTGGCGGCCGACCTGAAGGACTGGGAGGGCCTC 518 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||| |||| || ||||||| ||||| || |||||||| || || || Sbjct 519 AACGACGGGGAGCGACACTTCATCACCCACGTCCTCGCGTTCTTCGCCGCTTCCGACGGC 578 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || || | || || | | | || || || ||||||| ||||||||||| Sbjct 579 ATCGTCCTCGAGAACCTCGCTTCGCGGTTCATGAACGACATCCAGATCCCCGAGGCCCGG 638 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||||| || ||| ||| | ||| ||||| |||||||||||| || | Sbjct 639 TGCTTCTACGGGTTCCAGATCGCG-ATCGAAAACATCCATTCCGAGACGTACAGTCTGCT 697 Query 59852 GATCGATAAGTTGGTCAAGGAT----CCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAG 59907 ||||| | || ||||| | ||| || ||| | | |||||| || || Sbjct 698 CATCGACACGTACATCAAGAACAACGCCGAAAAAGA---CACG-CTGTTCAAGGCGATCT 753 Query 59908 AGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG----TCC 59962 |||| | || || || | | || || || |||||||| ||||||| | ||| Sbjct 754 CGACGGTGCCGTGC-GTCACGAAGAAGGCCGAGTGGGCCATCAAGTGGATCGGCAGCTCC 812 Query 59963 TGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTC 60022 || | || || | | ||| | || || ||| ||||| || ||||||||||| Sbjct 813 ----GCCACGTTCGCGGAGAGGCTCGTCGCGTTCGCAGCGGTGGAGGGCATCTTCTTCTC 868 Query 60023 TGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTT 60082 || |||||||| | || |||||||| || ||||| || || |||||||| |||| || Sbjct 869 CGGGTCGTTCTGCTCGATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCGGGGCTGACGTT 928 Query 60083 CTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 | | |||||| || ||||| ||||||||| Sbjct 929 CACGAACGAGTACATCTCCCGAGACGAGGGC 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548254562400720