Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq26061 145 8e-30 seq34427 131 2e-25 seq17960 84.2 2e-11 >seq26061 Length=1673 Score = 145 bits (160), Expect = 8e-30 Identities = 327/482 (68%), Gaps = 12/482 (2%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || |||| |||| || || ||||| || || |||||||||| ||| ||||| | ||| Sbjct 937 TCGTTCGTGAACGTCAGCCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATCGAGCAG 878 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || || || |||||||||||| || || || || ||||| || | | ||||||| Sbjct 877 AACGACCCGGAGAAGAAGATGCCCTCCACCGCTGCGAACGCGACGAGCCTCTCCGCGAAC 818 Query 74910 GGTGC--ATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTT--TCGTTTGACCGCAGG 74965 | || | | | | ||||| | ||||| || || || |||| ||| ||| | Sbjct 817 GTGGCGGAGCTGCCG--ATCCACTTGATGGCCCACTCGGCCTTCTTCGT--GAC-GCACG 763 Query 74966 G-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGT 75024 | || || |||||| | ||| || | | || || || | ||||| | | ||| Sbjct 762 GCACCGTCGAGATCGCCTTGAACAGCGTGTCTTTTTCGGCGTTGTTCTTGATGTACGTGT 703 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAG 75083 | || | || ||||||||| ||||| || ||| | ||| |||| || ||||| Sbjct 702 CGATGAGCAGACTGTACGTCTCGGAATGGATGTTTTCGATCG-CGATCTGGAACCCGTAG 644 Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATG 75143 || |||| ||||| | ||||| | || || || | ||| ||||| | | Sbjct 643 AAGCACCGGGCCTCGGGGATCTGGATGTCGTTCATGAACCGCGAAGCGAGGTTCTCGAGG 584 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||||||| || |||||||| || || || || |||| ||||| ||||| || Sbjct 583 ACGATGCCGTCGGAAGCGGCGAAGAACGCGAGGACGTGGGTGATGAAGTGTCGCTCCCCG 524 Query 75204 TCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAG 75263 || |||| ||||| ||||||||||| |||||| |||| ||| |||||||||||| Sbjct 523 TCGTTGAGGCCCTCCCAGTCCTTCAGGTCGGCCGCCAGGTCAACCTCTTCGACCGTCCAG 464 Query 75264 AA 75265 || Sbjct 463 AA 462 >seq34427 Length=4033 Score = 131 bits (144), Expect = 2e-25 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 53496 TCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGA 53555 |||| || ||||| ||||| |||||| ||||||| || |||||| |||| || || || | Sbjct 3590 TCGTACCGATGCTTCGCGTGTTCAACGACACGGCGCGTTACGTCGACCAAGGCGGAGGCA 3649 Query 53556 AGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTC 53615 |||| ||||| || ||||||||||||||||||||||||||||| ||||| | ||||| | Sbjct 3650 AGCGAAAGGGTTCCTTCGCCATCTACCTCGAGCCGTGGCACGCGGACATCTTCGAGTTCC 3709 Query 53616 TC 53617 || Sbjct 3710 TC 3711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || || || || ||||| |||||||||| || || |||| || |||||| Sbjct 3010 TTCACCCATGCAACCCCAACGTTGTTCAACGCAGGGACACCCAACCCGCAAATGTCGTCA 3069 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||||||| || || |||||||| ||||| ||||| || |||||||||||||| ||| Sbjct 3070 TGCTTCCTTGTAGCCATGAAGGACGACTCTATCGAGGGGATCTACGAGACGCTGAAGACC 3129 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTC-GAACGTCCGTGC 53451 || || ||||| ||| | || || ||||| || ||| | || ||| ||||||| Sbjct 3130 TGCGCGATGATCTCGAAGACTGCCGGCGGCATCGGCATACAC-GTTCACAACATCCGTGC 3188 Query 53452 GAACGG 53457 || || Sbjct 3189 CAATGG 3194 >seq17960 Length=1098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/132 (77%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 158949 GCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTG-GACCGGGCTGTTGGA 159007 ||||| | |||| ||| || || || | |||||||||| | ||| ||| || || | Sbjct 775 GCGGACGGAGTGCTGCTCGCCGGTTGCGAGCACAAAGTCCATGGCGACTGGG-TGCTGCA 717 Query 159008 GCATGAGCCACATGGCCTCG-ACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCC 159066 | || | ||||||| || || ||||| |||| |||||| |||||||||||||| || || Sbjct 716 GGATCATCCACATG-CCGCGCACGTAGTCCTTCGCGTGCCCCCAGTCGCGCTTCGCGTCG 658 Query 159067 ATGTTCCCGAGC 159078 |||||||| ||| Sbjct 657 ATGTTCCCCAGC 646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546946407197400