Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq29849 123 2e-23 seq21875 89.7 3e-13 >seq29849 Length=3363 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || |||| ||| | ||||| || ||||||||||||||| || || | | Sbjct 1046 CCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCA 1105 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || ||||| || || || || || || ||||| ||||| ||||| Sbjct 1106 AGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGG 1165 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || ||| | ||| ||||| | | ||| || Sbjct 1166 ATGCCTTCCTTGTCCTGGATC-TTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGAC 1224 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| | || ||||| || ||||| | || ||||||||||| ||||| ||| Sbjct 1225 TTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTTG 1276 >seq21875 Length=4161 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || | ||| |||| ||||| ||| |||||| || ||||| || || | Sbjct 215 CGCCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 274 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || |||| |||| || || || || ||||| || || | | ||| ||||| |||| Sbjct 275 CCAGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCG 334 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCC 34656 | | || |||||||| |||||| | || || | || ||||| | |||| Sbjct 335 GGATCCCTTCCTTGTCCTGGATCTTA-GACTTCACATTCTCGATCGTGTCGTTTGACTCC 393 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | ||| ||||| || ||||| | || ||||| ||||||||||| || Sbjct 394 ACCTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314578420915229