Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq29849 136 3e-27 seq34640 104 2e-17 seq2393 95.1 1e-14 >seq29849 Length=3363 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||||||| | || ||||| ||||| || | | Sbjct 1272 ATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACTCTCGAAGTCGAGTCCAAC 1213 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || || || || ||||| |||||||| || || || || Sbjct 1212 GACACGATTGAGAACGTGAAGTCGAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1153 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || || ||| | || ||| || ||| || |||| |||||| Sbjct 1152 CAGCGATTGATCTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCCTTGCCGACTACAAC 1093 Query 27168 ATTCAAAAGGAGTCGACC 27185 |||||||||||||||||| Sbjct 1092 ATTCAAAAGGAGTCGACC 1075 >seq34640 Length=3269 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || || || Sbjct 1342 ATGCAGATCTTCGTTAAGACCCTGACGGGCAAGACAATCACGCTCGAGGTCGAGTCGAAT 1283 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || ||||| || ||||| || || || || Sbjct 1282 GACACCATCGAGAATGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 1223 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || || |||| ||| | ||| || | || |||||| Sbjct 1222 CAGCGGTTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGGACGCTTGCGGACTACAAC 1163 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || |||| | ||| |||| ||||| Sbjct 1162 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGTGGTGG 1116 >seq2393 Length=4323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| ||||||||||||| ||||| || Sbjct 2155 ATGCAGATCTTCGTTAAGACTCTCACAGGCAAGACTATTACTCTTGAGGTGGAGTCGAAT 2096 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||| ||||| || || || || || || || Sbjct 2095 GATACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGGACCAG 2036 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || ||||| || || ||||| | ||| | | || |||||| Sbjct 2035 CAACGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACTACAAC 1976 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| ||| | || ||||| | || |||| || || Sbjct 1975 ATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTGCGCGGAGG 1929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434704132013760