Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq8416 223 9e-54 seq8567 113 1e-20 >seq8416 Length=35894 Score = 223 bits (246), Expect = 9e-54 Identities = 413/606 (68%), Gaps = 0/606 (0%) Strand=Plus/Minus Query 2383 CATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACCC 2442 ||| |||||| || || || || || |||| ||| |||||||| || || |||| Sbjct 6598 CATTTCACACACCTGCAATGTCGAGGCTGATGGGTTCGTATTGGTCGGTATCACCAACCC 6539 Query 2443 GCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCCT 2502 ||| | | || | ||| | ||||| || | |||||| || ||||| ||||||| Sbjct 6538 GCTGATACACGCGGATGTAGGACTTGGAGCCGATCACCTGGCAGGCGTCGCCAATGGCCT 6479 Query 2503 GCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTGC 2562 |||| || |||||||| ||||| || ||| | || ||||||| || || |||| | Sbjct 6478 GCATGGCGCGCTGCCAGCGTTCATCGGTGATTTCCATACGGCGCAACGCCAGGACGCGGG 6419 Query 2563 CGGTACGGATGTTCCCTGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGATGACCT 2622 | || ||||||| || |||||| || || ||||| || | |||||||| || | Sbjct 6418 CTGTGCGGATGTCGCCCTTTTGGTCAGTCCGAAAGGCATCATTTACCAGCGTGACCACTT 6359 Query 2623 CCGCGCGAGCGCCTTCTGTCCATTCGTGGAGGCACTCGTCGATCAACGCCTTGGCCGCCT 2682 | | || || || | ||||| ||| | |||||||| || ||||| || || |||| Sbjct 6358 CGGGACGTGCCCCGGCGGTCCAGTCGCGCAGGCACTCATCAATCAATGCACGCGCAGCCT 6299 Query 2683 GCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACCGT 2742 | ||||| |||||||| |||||| | || | || || |||| |||| | || || | Sbjct 6298 GGAGGCGTTCGTCGAAAGCGATGCTTTCCTGGACTGCGCGCATGATCTTGAAACGCCCAT 6239 Query 2743 CGAAGCTGACCAGGGAGGCGTTGCCCTTCTTGCCACCTACCTTCGCCTGGTACTGCTCGG 2802 ||||||||| |||| | | || |||||||||||||| | || || ||||||||| | Sbjct 6238 CGAAGCTGATCAGGCTGACATTTCCCTTCTTGCCACCGATCTGGGCGCCGTACTGCTCAG 6179 Query 2803 CCGACAGTGTGATGAAGGCTTCGATATCGCCGAATGTCGCCAGTTTGAAATCCAGCAACG 2862 | ||| || |||||||||||||| ||||| | || ||||| | | || | Sbjct 6178 CACTGAGTTCGACAAAGGCTTCGATATCACCGAAGGCCGAGGCCTTGAACTTCGCCAGCA 6119 Query 2863 CCTTGTTCAGAGCCTTCCCCTTGGCAACGATCTCCTGCACAAGGCGGTCGCGCTCCAGGT 2922 | | | | ||| | || |||| | | | || ||| ||| |||||||||| Sbjct 6118 CATCGCTGGCAGCGCGGGCTTTTTCAACCAGGCCAAGTACCAGGGCGTCCCGCTCCAGGT 6059 Query 2923 CGATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGTACCCGG 2982 | || || ||||||| ||| || | ||| ||| | ||||| | |||||| || Sbjct 6058 CTATAGGTTTGATCAGACTTTCCGGGATCAGCCGCTTTTGCGCGTCGACGCGGTAGCCTT 5999 Query 2983 CGGGAA 2988 |||||| Sbjct 5998 CGGGAA 5993 Score = 150 bits (166), Expect = 5e-32 Identities = 321/477 (67%), Gaps = 2/477 (0%) Strand=Plus/Plus Query 13299 TACCGGCGCACCCTGGTGCGCAGCGCCCATGCCGAATGGGGCCTGTCGGCGCCGATCGCC 13358 ||||| ||| |||| |||| |||||| | |||||||||||| || ||| | || Sbjct 11252 TACCGCCGCGACCTGACCCGCATCGCCCAGTCGGAATGGGGCCTGGATGCACCGGTATCC 11311 Query 13359 ACCTTTGCCGCACAGGTTCACCAGGAAAGCCGTTGGC-GTGCTGATGCCCGCTCGCCTGT 13417 ||||| ||||| ||| | |||||||||||||| ||| || | || || ||||| || Sbjct 11312 ACCTTCGCCGCTCAGATCCACCAGGAAAGCCGCTGGAAGTTC-GACGCGAAGTCGCCCGT 11370 Query 13418 TGGTGCCCAGGGTCTGGCGCAGTTCATGCCCGGAACCGCTGAGTGGATCGCCGGCCTGTA 13477 ||||| || || ||| ||| | |||||| ||||| ||| | |||| ||| Sbjct 11371 CGGTGCGCAAGGCTTGGGCCAGGTGATGCCCTCGACCGCCACCTGGCTTGCCGAGTTGTT 11430 Query 13478 TCCGGCCGTCCTCGGCACCAATCAGCCGTTCAATCCAGGCTGGGCACTGCGCGCGCTGGT 13537 ||| | ||||||| |||||| || || | ||| | ||| || || || Sbjct 11431 TCCCAAGGCTCTCGGCAAGGTCGAGCCGTATAACCCGGTTTGGTCCATGCAGGCACTTGT 11490 Query 13538 CACCTACGACCGTTGGCTCTACGACCGAAACCAGGCCTCCAGCGAGTGTGATCGCTGGGC 13597 || ||| ||||| ||||| |||| | | |||| || || || | |||| Sbjct 11491 CAGCTATGACCGCTGGCTAGCGAACCGCATCAAGGCGCGTGGCCCCTGCGAACAAGGGGC 11550 Query 13598 ATTCGTACTGTCCGCTTACAACGGCGGCCAGGGGTGGGTAAATCGCGACCGTAGGCTGGC 13657 | | || ||||| ||||||||||| ||| ||||| | ||||| | | |||| Sbjct 11551 GCTGATCCTTTCCGCCTACAACGGCGGTTTGGGCTGGGTGATCAAAGACCGCAAGTTGGC 11610 Query 13658 CTTGGCATCCGGCGCCGACCAGCTGGCCTGGTTCGATTCCGTCGAGCGCTTCAACGCCGG 13717 | ||| || ||||| | |||| |||||||| | ||||||||||| ||||| ||| Sbjct 11611 ATCGGCTAAGGGTGCCGATCCGCTGACCTGGTTCAACTCCGTCGAGCGGTTCAATAACGG 11670 Query 13718 GCGCTCGGCCGCCAACTTCCGCGAGAACCGCAACTACCCGCGCCTCATCCTGCTGCG 13774 |||||||| || ||| || || || | |||||||| || |||||| |||| Sbjct 11671 CCGCTCGGCTGCTGCGTTCAAGGAAAATCGTCAATACCCGCGTCTGATCCTGTTGCG 11727 Score = 129 bits (142), Expect = 1e-25 Identities = 286/426 (67%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 14895 CAGTACGTGCTTCGCGACGACTACATCCGCGGCCAGAGCGTGATCGAGATGAAGCTCGAT 14954 || ||||||| || || |||||| | |||||||| | |||||||||| ||||| ||| Sbjct 12826 CACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTGAT 12885 Query 14955 AGCCTGGCCACGAAACTGGAAAACGCGCAGTTGCGCGGCTTGGTAGGAGCAAACCATGCA 15014 ||||| || || |||| || || || || || || || || | Sbjct 12886 GCGTTGGCCCTCAAGCTAGAAACCGTTCAATTAAAAGGACTGA----AGTAA----TGAA 12937 Query 15015 AACTGATATGGCCAAGATTCGCCGGGAATCCCTGCGCTGGCTGATTCTGCTGACCCTGAA 15074 | || ||||| | ||||||||||||||||||||| || | ||||||| | Sbjct 12938 CATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAAGACCCTGGA 12997 Query 15075 CAACGCTCGACCGGTGGGTGCCTACGAAGGTCCGGTCCTTTCCGTGGCGCAGAGCGAGTA 15134 || | | || || || | | | | || | | ||| | ||| || || || Sbjct 12998 CACCTCGCGCCCCGTAGATCCTCATGAGGCTGTGGTGTTGTCCACTATCCAAGGCATCTA 13057 Query 15135 TCCCGACGCGA-CACCACTGGAGATCCGCCGCGAGCTGGACTACTTGGCCGACCGTGACC 15193 ||||||||| | ||||| ||||| | |||||||| || ||||| |||||||||||| || Sbjct 13058 TCCCGACGCCACCACCA-TGGAGCTGCGCCGCGAACTTGACTATTTGGCCGACCGTAGCC 13116 Query 15194 TGGTGACCCTGGTCAAGGAACCGTCCGGCAAGTGGTTCGCCGATTTGACCCGGTACGGCA 15253 ||||||| |||| ||| | || ||| |||| || || |||||| ||||| Sbjct 13117 TGGTGACGCTGGACAAAAAGCCCAACGGTGTGTGGATCTGCGGCCTGACCCACTACGGGG 13176 Query 15254 CCGACGTCGCCGAGTACACCATCGACTGCGAACCCGGCATCGCTCGCCCCAAGAAGTACT 15313 ||| | || || |||||||||| |||| | || || | || || || | ||||||| Sbjct 13177 TCGATATTGCGGAATACACCATCGCCTGCAATCCAGGTGTTGCCCGTCCAGAAAAGTACT 13236 Query 15314 GGTGAC 15319 |||||| Sbjct 13237 GGTGAC 13242 Score = 109 bits (120), Expect = 1e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 16381 GCCCTGAGCAGCCGGCCGAGCAACCTGCGCGGCCTGCAGGGCGACGTGGTGATCGACGAG 16440 || |||| ||| || ||| |||||||||||||| ||||||| || ||||||||||| Sbjct 14133 GCGCTGACCAGTCGCCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAA 14192 Query 16441 GCGGCGTTCCACGAGTCCCTGGAGGAACTGCTGAAGGCCGCCCTGGCGCTGACGATGTGG 16500 || |||||||| | | | ||| || |||||||| || ||| |||| ||| ||| ||| Sbjct 14193 GCCGCGTTCCATGCGGACTTGGCCGAGCTGCTGAAAGCTGCCATGGCTCTGTTGATCTGG 14252 Query 16501 GGTAACAAGGTCCGCCTGATCAGCACCCACAACGG 16535 || | |||| |||||||||||||| |||| Sbjct 14253 GGCGGTGAAGTCCATGTGATCAGCACCCACGACGG 14287 >seq8567 Length=29384 Score = 113 bits (124), Expect = 1e-20 Identities = 128/168 (76%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261 |||||||| || || || ||||| || || || || |||||||||||||||||||| Sbjct 4896 ATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGGCA 4837 Query 28262 GATGATCCGGTCAAGGCGTC-GCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320 || || ||||| ||||| || || || ||| || || | || ||||| |||||||| || Sbjct 4836 GACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCTTC 4778 Query 28321 GGTGTACGAGCAGATCACTGCCCTGGAGAGGCAGGGGGA-CACGCTGG 28367 ||| ||| |||||| | || |||||| |||||| || ||||| || Sbjct 4777 GGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGATCACGCCGG 4730 Score = 107 bits (118), Expect = 5e-19 Identities = 395/608 (65%), Gaps = 18/608 (3%) Strand=Plus/Minus Query 29144 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 29203 ||| |||| |||||||||||||||| || || || |||||||| | | ||| Sbjct 4017 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCCCTGGAGGCCGTCAAAGGCAAG 3958 Query 29204 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 29263 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 3957 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 3898 Query 29264 AACATGGTCAAGGCGCAGAAGAAGGCAGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 29321 ||||||||||||||||| |||| ||| | | || || || | ||| ||||| Sbjct 3897 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCA--CCAACG 3840 Query 29322 AACAGGGGCGCCTGAAGAAACAGGCCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 29381 | || |||||| | |||| | | || ||| ||||| | || || | Sbjct 3839 AGACCGGACGCCTGGCCGAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 3780 Query 29382 AACAACAGGATGCGCTGGCCCTCCAGGGTCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 29441 | |||||| || |||| || || ||||| || | || ||||||| ||| | Sbjct 3779 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 3720 Query 29442 --CGCAACAGCGC-CGCTTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCACAGC 29498 ||| | | ||| | | ||| | | ||||| | ||||| || || |||| Sbjct 3719 ACCGCCAGAACGCACTCAACGGCGAACTG---AACAGCCAGCAAGACCGGTTTGCTCAGC 3663 Query 29499 AGCGCCTGGACCTGGCGAGCCAGTACGGCGACGGCTCGCGTGGCATGAGCCTCGACGAGT 29558 || ||||| |||| | |||| | |||| ||||| |||| || |||| Sbjct 3662 AGTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGT 3603 Query 29559 ACAA-CGACAAGCTGCAGAAGCT-GCAG--GCGAACCACGCGGCGATGACCGAGCAGCTC 29614 ||| ||| || | ||| ||| |||| |||||| | || || || || ||| || Sbjct 3602 TCAAGCGAAAATC-CCAGGCGCTCGCAGATGCGAACAAGGCCGC---CACTGACCAGATC 3547 Query 29615 CAACGCAACTACGCGGCCTTGCAGATCGCGCAGGCAGACTGGACCAACGGTGCCCGCTCG 29674 | | ||||| |||| || ||| ||| |||| || ||||| || || || ||| Sbjct 3546 CGGCAGAACTATGCGGATGTGGAGAACGCCCAGGGCGATTGGACGAAGGGCGCGACGTCG 3487 Query 29675 GCGTTCGCCGACTATCTCGACTCGGCCAGGAACGTCGCGGGCCAGACCTACGACCTGTTC 29734 |||| ||| | ||||| || ||||| | |||| |||| ||||||||| | ||||||| Sbjct 3486 GCGTGGGCCAATTATCTGGATTCGGCGAAGAACATCGCCGGCCAGACCAAGACCCTGTTC 3427 Query 29735 AGCAACGC 29742 |||| || Sbjct 3426 GGCAATGC 3419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126516758713830