Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq18707 266 3e-66 >seq18707 Length=2802 Score = 266 bits (294), Expect = 3e-66 Identities = 486/706 (69%), Gaps = 7/706 (1%) Strand=Plus/Plus Query 34139 GGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCC 34198 |||| ||| ||||| ||||| || || ||||| || | ||||||| ||| Sbjct 1892 GGCTTCCGCAAGGGCGACCGAACGGGCGTCGGGACGATCAGCAAGTTCGGCGACCAGATG 1951 Query 34199 CGATACAACCTTCGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAG 34255 || |||| | | || | || || ||||||||||||||||| || |||| |||| Sbjct 1952 CGGTACAGCTTGCGCGACGGGGTGTTCCCGCTGCTGACGACGAAGCGGGTGTTCTGGCGC 2011 Query 34256 GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG 34315 || || | ||||||||| | |||||||| | ||| |||| || ||| | || | Sbjct 2012 GGGGTCGCGGAGGAGCTGTTCTGGTTCGTCAAGGGCTGCACGGACGGCAACGTCCTGAAG 2071 Query 34316 TCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG 34375 ||| || ||||||||||| |||| | || || || || |||| ||||| Sbjct 2072 GAGAAGGGCGTCGGGATCTGGGACGGAAACGGCACGCGCGAGTTCCTCGACAGCAGGGGG 2131 Query 34376 TTCCCATCTC-GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTT 34434 || | | | |||||||| |||| |||| || ||||||| ||||||||| | ||||| Sbjct 2132 CTCG-AGCACAGGGAGGAGAACGACCTGGGGCCCATCTACGGCTTCCAGTGGCGGCACTT 2190 Query 34435 TGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCA 34494 ||||||||||| || | | || ||||| | || ||||| | ||||||||| Sbjct 2191 CGGGGCGGAGTACAAGGACCGGAACGCCGACTACACCGGGCAGGGCGTCGACCAGCTGGC 2250 Query 34495 GTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTG 34554 | | |||||| ||||| | ||| ||||| || || || ||||| | | | ||||| Sbjct 2251 GCAGGTGATCCACACCATCAAGACCAACCCCGACGATAGGCGGATCATCCTCTCGGCGTG 2310 Query 34555 GAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTA 34614 |||||| || || ||||||||| |||||||||||| |||||||| ||||| Sbjct 2311 GAACCCCGCGGCGCTGAAGGAGATGGCGCTGCCCCCGTGCCACGTGCTCTGCCAGTTCTA 2370 Query 34615 CGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGG 34674 |||||| || |||||||| ||||| || | || ||||| ||| | ||||||||| | || Sbjct 2371 CGTCGCCAACGGGGAGCTCTCCTGTCAAATGTACCAACGGTCGTGCGACATGGGGCTGGG 2430 Query 34675 GGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-G 34733 || || |||||||| ||| |||| | ||| | ||| | ||||| | || ||| | Sbjct 2431 CGTCCCCTTCAACATCGCTTCTTACTCCCTGTTGACGGTGCTTCTCGCTGACGT-GTGCG 2489 Query 34734 GGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACA 34793 ||||| || || || | | ||| || | ||||| ||||| | ||| |||||| Sbjct 2490 GGTTGAAACCAGGCGATTTCATCCATTCGCTTGGGGACGCGCACGTATACACCAACCACG 2549 Query 34794 TCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 | || | ||| || ||||| | |||||||||| || || || Sbjct 2550 TGGACCCCCTCAAGAAGCAGCTCGAGAGAGAGCCCCGCCCCTTTCC 2595 Score = 266 bits (294), Expect = 3e-66 Identities = 486/706 (69%), Gaps = 7/706 (1%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 || || || |||||||||| | ||||| || ||| | || | |||||| ||| Sbjct 2595 GGAAAGGGGCGGGGCTCTCTCTCGAGCTGCTTCTTGAGGGGGTCCACGTGGTTGGTGTAT 2536 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGACATGAGC 6624 | ||||| ||||| | || ||| | | || || || |||||| ||| || | ||| Sbjct 2535 ACGTGCGCGTCCCCAAGCGAATGGATGAAATCGCCTGGTTTCAACCCGCAC-ACGTCAGC 2477 Query 6625 GATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTC 6684 || | ||| | ||| | |||| ||| |||||||| || || || | ||||||||| Sbjct 2476 GAGAAGCACCGTCAACAGGGAGTAAGAAGCGATGTTGAAGGGGACGCCCAGCCCCATGTC 2417 Query 6685 TCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAG 6744 | ||| ||||| || | || ||||| |||||||| || ||||||||||| |||||||| Sbjct 2416 GCACGACCGTTGGTACATTTGACAGGAGAGCTCCCCGTTGGCGACGTAGAACTGGCAGAG 2357 Query 6745 GGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCAC 6804 |||||||||||| ||||||||| || || ||||||||||| | | | Sbjct 2356 CACGTGGCACGGGGGCAGCGCCATCTCCTTCAGCGCCGCGGGGTTCCACGCCGAGAGGAT 2297 Query 6805 GATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGC 6864 ||||| || || || ||||| ||| | ||||| |||||| | | ||||||||| | Sbjct 2296 GATCCGCCTATCGTCGGGGTTGGTCTTGATGGTGTGGATCACCTGCGCCAGCTGGTCGAC 2237 Query 6865 TCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924 ||||| || | ||||| || | | || ||||||||||| ||||| | |||||| Sbjct 2236 GCCCTGCCCGGTGTAGTCGGCGTTCCGGTCCTTGTACTCCGCCCCGAAGTGCCGCCACTG 2177 Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC-GAGATGGGAACCCCCGCTTGTCCA 6983 ||| ||||||| || |||| |||| |||||||| | | | || ||||| |||| | Sbjct 2176 GAAGCCGTAGATGGGCCCCAGGTCGTTCTCCTCCCTGTGCT-CGAGCCCCCTGCTGTCGA 2118 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGG 7043 | || || || | |||| ||||||||||| || ||| | || | ||| Sbjct 2117 GGAACTCGCGCGTGCCGTTTCCGTCCCAGATCCCGACGCCCTTCTCCTTCAGGACGTTGC 2058 Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103 || |||| ||| | |||||||| | ||||||||| | || || |||| |||| | Sbjct 2057 CGTCCGTGCAGCCCTTGACGAACCAGAACAGCTCCTCCGCGACCCCGCGCCAGAACACCC 1998 Query 7104 GTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGA 7160 | ||||||||||||||||| || || | || | | |||| || ||| ||||| Sbjct 1997 GCTTCGTCGTCAGCAGCGGGAACACCCCGTCGCGCAAGCTGTACCGCATCTGGTCGCCGA 1938 Query 7161 ACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCC 7206 || | || ||||| || || ||||| ||||| ||| |||| Sbjct 1937 ACTTGCTGATCGTCCCGACGCCCGTTCGGTCGCCCTTGCGGAAGCC 1892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448041557925360