Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq34640 172 1e-37 seq2393 172 1e-37 seq29849 168 2e-36 seq21875 156 1e-32 seq36249 93.3 1e-13 >seq34640 Length=3269 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||||||| ||||| || || Sbjct 1131 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTCC 1190 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || |||||||| || | || ||||||||| Sbjct 1191 TCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 1250 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| || |||||||| ||||| ||| Sbjct 1251 TGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTC 1310 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| || || | |||||| || Sbjct 1311 TTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTT 1345 >seq2393 Length=4323 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| || |||||||| || || || || ||||| |||||| Sbjct 1944 AGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCT 2003 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | |||||||||||| ||||| || ||||| ||||| || || | || ||||||||| Sbjct 2004 TCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCC 2063 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| ||||||||||| ||| || ||||| ||||| || ||| Sbjct 2064 TGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGAGTAATAGTC 2123 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||||||||| || || | |||||| || Sbjct 2124 TTGCCTGTGAGAGTCTTAACGAAGATCTGCATCTT 2158 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| || |||||||| || || || || ||||| |||||| Sbjct 912 AGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCT 971 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | |||||||||||| ||||| || ||||| ||||| || || | || ||||||||| Sbjct 972 TCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCC 1031 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| ||||||||||| ||| || ||||| || ||||| ||| Sbjct 1032 TGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGGGTGATAGTC 1091 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| || ||||| | ||||||| Sbjct 1092 TTGCCAGTAAGAGTTTTCACAAAGATCTGCATT 1124 >seq29849 Length=3363 Score = 168 bits (186), Expect = 2e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 |||| || |||||||| || || ||||| ||||| ||||| || || |||||||| | Sbjct 1055 AGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGA 1114 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || || ||||| ||||||||||| | || || |||||||| || | |||||| Sbjct 1115 CCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCC 1174 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| |||||||| || || ||||| | || || ||||||||| Sbjct 1175 TTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTG 1234 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| || || || ||||| ||||| | |||||||| Sbjct 1235 ATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTT 1275 >seq21875 Length=4161 Score = 156 bits (172), Expect = 1e-32 Identities = 172/228 (75%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||| ||||| || |||||||| || |||||||| || || || || || Sbjct 222 ACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 281 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || || || || |||||||| || |||||||| || | || ||||| || || | || Sbjct 282 TCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCC 341 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 |||||||||||||||||| ||||| || ||||| ||||| | || || ||||| Sbjct 342 TTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTC---GTTTGACTCCACCTC 398 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||||||||| || || || ||||| || || | |||||| || Sbjct 399 AAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 >seq36249 Length=3418 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||||||| |||||||| || || |||||| | || |||||| Sbjct 3409 CCTTCCTTGTCCTGGATCTTTGACTTCACGTTCTCAATCGTGTCATTGGACTCGACCTCG 3350 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| || || || || || ||||| | |||||| Sbjct 3349 AGTGTGATCGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 3306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158566652509745