Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq34640 96.9 3e-15 seq29849 86.0 5e-12 seq21875 82.4 7e-11 >seq34640 Length=3269 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || ||||| || | |||| || Sbjct 1133 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTCCTC 1192 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || | ||||||||||| | || | || ||| |||||| Sbjct 1193 CAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 1252 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | || | | || || ||||||| || || | |||||| | || Sbjct 1253 GATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTCTT 1312 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||||||| || ||||| ||||| |||||||| Sbjct 1313 GCCCGTCAGGGTCTTAACGAAGATCTGCATCTT 1345 >seq29849 Length=3363 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || |||||||| || || |||| || || || || || || || Sbjct 1081 CTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAA 1140 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | ||||||||||| | || | || || |||||| ||| ||| || | | Sbjct 1141 GATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTT 1200 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||| ||| | ||||| || || | ||||| | || || ||||| || || || Sbjct 1201 CTCAATCGTGTCGTTGGACTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCAC 1260 Query 39273 AAAGATTTGCATCTT 39287 ||| |||||||| || Sbjct 1261 AAAAATTTGCATTTT 1275 >seq21875 Length=4161 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || |||| || || ||| ||| || || || || || ||||| || |||| |||| Sbjct 232 AAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCTGCCGTCC 291 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || ||||| || || || || || || | ||||||||||| || | | || |||||| Sbjct 292 TCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCTTCCTTGTCC 351 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || || | || | | ||| ||| | |||||||| || | ||||| | Sbjct 352 TGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACCTCAAGGGTGATCGTC 411 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || ||||| || || || || || |||||||| Sbjct 412 TTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429339269516069