Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq21875 167 6e-36 seq29849 138 3e-27 seq34640 131 4e-25 seq9892 84.2 5e-11 >seq21875 Length=4161 Score = 167 bits (184), Expect = 6e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| ||| |||||||| ||||| || || |||| ||||| ||||||| || Sbjct 222 ACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 281 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || || || |||||||| || |||||||| |||| || ||||||||||| || || Sbjct 282 TCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCC 341 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||||||| ||||| ||||| | ||||| || | Sbjct 342 TTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACCTCAAG 401 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| || |||| || || | ||| | ||||| || Sbjct 402 GGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 >seq29849 Length=3363 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| ||| ||||||||||| || || || ||||| | ||||| ||||| | || | Sbjct 1055 AGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGA 1114 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || || ||||| || |||||||| | ||| || ||||| ||||| || |||||| Sbjct 1115 CCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCC 1174 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| |||||| || || ||||| || || || || | ||| Sbjct 1175 TTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTG 1234 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| |||| || || | || | ||||||||| Sbjct 1235 ATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTT 1275 >seq34640 Length=3269 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || || | || || || || Sbjct 1131 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTCC 1190 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| |||||||| | || || ||||| ||||| || || |||||||| Sbjct 1191 TCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 1250 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| | || || || | |||||| ||| Sbjct 1251 TGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGTC 1310 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||| || || | ||| | ||||| || Sbjct 1311 TTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTT 1345 >seq9892 Length=17670 Score = 84.2 bits (92), Expect = 5e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||| | |||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 9265 GGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGACCCC 9324 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||| | |||||| |||| | | |||||||| | || |||| Sbjct 9325 CGTCAATTCCTTTGAGTTTCACGCTTGCGCGCGTACTCCCCAGGTGGATCACTTAACGCT 9384 Query 7856 TTAGCT 7861 || ||| Sbjct 9385 TTCGCT 9390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191928996712622