Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq18707 223 3e-53 seq32274 86.0 5e-12 >seq18707 Length=2802 Score = 223 bits (246), Expect = 3e-53 Identities = 422/629 (67%), Gaps = 0/629 (0%) Strand=Plus/Minus Query 29604 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGT 29663 ||| ||| |||||||| | |||||| ||||||||||| || | || || |||||||||| Sbjct 2603 TCAATGTCGGAAAGGGGCGGGGCTCTCTCTCGAGCTGCTTCTTGAGGGGGTCCACGTGGT 2544 Query 29664 CAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29723 ||| ||||| || || || || | |||| || || || |||| | |||| | Sbjct 2543 TGGTGTATACGTGCGCGTCCCCAAGCGAATGGATGAAATCGCCTGGTTTCAACCCGCACA 2484 Query 29724 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCC 29783 ||| ||| | | ||| | || ||||| |||||||| ||||| || || |||| Sbjct 2483 CGTCAGCGAGAAGCACCGTCAACAGGGAGTAAGAAGCGATGTTGAAGGGGACGCCCAGCC 2424 Query 29784 CCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACT 29843 ||||||| | |||| ||||| | || || |||||||| |||| | ||||| |||| Sbjct 2423 CCATGTCGCACGACCGTTGGTACATTTGACAGGAGAGCTCCCCGTTGGCGACGTAGAACT 2364 Query 29844 GACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCAC 29903 | || | | |||||||| || || ||||| || | ||||||||| || Sbjct 2363 GGCAGAGCACGTGGCACGGGGGCAGCGCCATCTCCTTCAGCGCCGCGGGGTTCCACGCCG 2304 Query 29904 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 29963 | | |||||| ||||| || || |||||| || ||||| || | | | ||||| Sbjct 2303 AGAGGATGATCCGCCTATCGTCGGGGTTGGTCTTGATGGTGTGGATCACCTGCGCCAGCT 2244 Query 29964 GATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCC 30023 | || || ||| ||| | |||||| | |||| |||| Sbjct 2243 GGTCGACGCCCTGCCCGGTGTAGTCGGCGTTCCGGTCCTTGTACTCCGCCCCGAAGTGCC 2184 Query 30024 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30083 ||||||||| ||||| | || |||||||| ||| ||||||||||||| ||||| Sbjct 2183 GCCACTGGAAGCCGTAGATGGGCCCCAGGTCGTTCTCCTCCCTGTGCTCGAGCCCCCTGC 2124 Query 30084 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30143 |||| | || || | | ||||| ||||||||||| || |||||||| || Sbjct 2123 TGTCGAGGAACTCGCGCGTGCCGTTTCCGTCCCAGATCCCGACGCCCTTCTCCTTCAGGA 2064 Query 30144 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30203 | ||| || ||| | || |||||||||| | |||||||||| |||| | ||| | Sbjct 2063 CGTTGCCGTCCGTGCAGCCCTTGACGAACCAGAACAGCTCCTCCGCGACCCCGCGCCAGA 2004 Query 30204 AGACCCTCTTGGTCGTGAGGAGGGGAAAC 30232 | |||| ||| ||||| || || || ||| Sbjct 2003 ACACCCGCTTCGTCGTCAGCAGCGGGAAC 1975 >seq32274 Length=1597 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 53480 GACGGCAAGAAGCTCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGAC 53539 |||||||| |||| ||||||| | || | || || ||| || | |||||| Sbjct 459 GACGGCAACCGCTTCGTGAAGGTGAAGGTGCGATCCGTGCGGATCCCGCAGGTCGGCGAC 518 Query 53540 AAGTT-TGCATCCTTCACGGCGCAAAAGGGGACATGCGGAG---CGGTCCTGACTCAGGA 53595 ||||| |||| || ||||| ||| |||||||| ||| || ||| | |||| Sbjct 519 AAGTTCTGCAGCCGGCACGG-GCAGAAGGGGACGCTCGGCATCACGTTCCGGG---AGGA 574 Query 53596 GGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTT 53655 ||||||||||||| |||| || | ||||| ||| ||||||| |||||||||||| | Sbjct 575 GGACATGCCCTTCACGCAGGAAGGCATCGTGCCGGACATCATCATGAACCCCCACGCCAT 634 Query 53656 TCCCTCCAGGATGACG 53671 || || |||||||| Sbjct 635 CCCGTCGCGGATGACG 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405968101156918