Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_030908.1 Length=36938 Score E Sequences producing significant alignments: (Bits) Value seq8416 242 9e-60 >seq8416 Length=35894 Score = 242 bits (268), Expect = 9e-60 Identities = 277/372 (74%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 1364 GTAAAGACGAAGCGAGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACAT 1423 |||||| | | ||| || |||||||| || ||||| ||| | || | ||||| Sbjct 1429 GTAAAGCGGCAAGGAGTGCCTGAACATGCGTAACCAAAAAGATGACAGAACATTAGACAT 1488 Query 1424 CTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGTGAGTGCAACTACGCCGCCCAAAT 1483 |||| |||||||||||||| | ||||||| ||| | ||||||| |||||||| | Sbjct 1489 CTTCTCTGTTCCGCAGCCGGTGCTTTCTATACCCGGTCACGGCAACTATGCCGCCCAGGT 1548 Query 1484 CAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCGC 1543 |||||| |||||||||||| | || || | | |||| | ||||| || ||| | || || Sbjct 1549 CAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTCCGACTTGGACCGCTATGAGATTGCGGC 1608 Query 1544 CCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAGAACATGCTCGACGCCTGGTCGAG 1603 |||||||| ||||| || ||||| ||||| || ||||||||| | ||||||||||| || Sbjct 1609 TCGCATGTCACGCCTTTCGGGCGACGACGTTAGCAAGAACATGTTAGACGCCTGGTCAAG 1668 Query 1604 CCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTG 1663 || ||||| | ||||||||||| ||| | || || || || | |||||||| ||||| Sbjct 1669 TCCTGCCCGTGCAGATCACAACCTACCTCTGTATCGAGCTGCTTTGCTGGAGGAAGTCTG 1728 Query 1664 CGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTGCGTGGCGGCCGCGTGGCTTACGG 1723 || |||||| | ||||| || |||| || |||| || ||||| || ||||| || Sbjct 1729 TGCAAGCCATGTCCTGACGAATTGGCAAGTACACCTGCGCGGTGGCCGGGTCGCTTATGG 1788 Query 1724 CCGCGATGCACT 1735 ||||| || || Sbjct 1789 GCGCGAGGCTCT 1800 Score = 127 bits (140), Expect = 5e-25 Identities = 317/473 (67%), Gaps = 29/473 (6%) Strand=Plus/Plus Query 3262 GCATGAAATCAAGGCACTGCGCCCGTTCATTCGCCGCGACTTCACCAAGCTACT---CCC 3318 ||| ||| |||| || |||| || |||| |||||| | ||||||| | ||| Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCGC---TCCACCAAGAGCATGTACCC 2671 Query 3319 GACCGACGTCTATTCCTGCGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 3378 | |||||| | || ||||||||||| ||| || || ||||| | |||| | ||| Sbjct 2672 GTGCGACGTATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACGCA 2730 Query 3379 -CGGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTC 3437 |||| ||| | ||| |||||| |||||| || |||| || ||| || || | Sbjct 2731 CCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCG--CAAGGC 2788 Query 3438 C--GGGATGGTCCACCGGCCTGGCCGAGTCGGCCTTGGTGGTGGTCGATGCCCTGCGCGA 3495 | ||| |||| || ||||||||| || | | || | || |||||||| || Sbjct 2789 CGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGTGA 2848 Query 3496 CGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACG 3554 |||| |||| || |||||| || | |||||||| |||||||| || |||| | Sbjct 2849 CGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTTTG 2904 Query 3555 TCAACCACATGATGCGCGACGAAGCGGTCGGCCTTATGGGCCGCCTGGGCATCGATATGA 3614 |||| ||| | || |||| |||| || | | ||| |||| ||||| Sbjct 2905 CCAACGACACCGTACG---TGAAGTAGTCGACCGTCTCGGC------GGCA---CTATGA 2952 Query 3615 AGAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATCGAGCGCGTTCACCAGAGCC 3674 | | ||||||||||||||||||| || ||| | || ||||| ||||| | Sbjct 2953 CCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAACGA 3012 Query 3675 TGTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 3727 | ||| | || |||||| | ||| || ||||||||||||||||||||||| Sbjct 3013 TTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 104 bits (114), Expect = 6e-18 Identities = 70/76 (92%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 9437 AGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGACG 9496 ||||||||||||||||| || | |||||||||||||||||||||| |||||||||||| | Sbjct 8689 AGCGAAACCGCCCCGGCGTG-CTGGGACGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 8747 Query 9497 AGCAGCCAACCCATGA 9512 ||||||| |||||||| Sbjct 8748 AGCAGCC-ACCCATGA 8762 Score = 100 bits (110), Expect = 7e-17 Identities = 219/322 (68%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 9769 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 9828 || |||||||||||||||| | || || |||| ||||| ||||| ||||| ||| | Sbjct 9061 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTG 9120 Query 9829 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 9888 | ||||| || | ||||| |||||||| || | ||| |||||| ||| ||| Sbjct 9121 GGCCGCGTGGCAGATGTGCGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTA 9180 Query 9889 CTGGTCGAACTCCAGCGCTTGGGCTGGAAAC---CGAAGAGCAATCGGCAAGGCCGGGCG 9945 |||| ||| || ||| |||||||| | | | ||| || |||||| | || Sbjct 9181 CTGGCCGAGTTCGCTCGCCTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCA 9238 Query 9946 ACGCCAAAAGTGCCG---CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCT 10001 | | || |||| || | | |||| | ||| | || || | ||||| || | || Sbjct 9239 AAG-CACCAGTGGCGGCTCCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCT 9296 Query 10002 GGCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGT 10061 || || | || ||||| ||| |||||| ||||||| |||||||||| |||| Sbjct 9297 CTCCGAGGCAAAGCGTTCCTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGT 9356 Query 10062 CGAGCGGGTCGAGTGGCTGGAC 10083 ||| || ||||| ||||| ||| Sbjct 9357 CGAACGCGTCGAATGGCTAGAC 9378 Score = 89.7 bits (98), Expect = 1e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 6188 TGCTGGCCGCCGAGGTGGCCCGCAGCAGCCAGACGAAGGCCGGCGAGGCAATCGGCATGA 6247 |||| |||||||| || ||| ||||| | || |||||| | || |||||||||| Sbjct 5330 TGCTTGCCGCCGAAGTTGCCGCCAGCAATAAAACCAAGGCCAGTCAGCGCATCGGCATGA 5389 Query 6248 GCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGTCGCCCTCGACGATCCGCG 6307 |||| | |||||||| ||||| |||||||||||| |||||| || ||| Sbjct 5390 GCCGCACAGCCGTCAGCTTGATCCTGGCCAACCGCTACAGCTCGCCCAGCACCTCTGGCG 5449 Query 6308 TCGAGCGTCGTGTCCTGGCCGCGCTGAGCCGCATTGAGTGCCCGGCCCTGGGCGAGGCGG 6367 |||||||||| || ||| | ||| | || ||||| ||| || |||| |||| | Sbjct 5450 TCGAGCGTCGGGTAATGGAAACCCTGGGGCGAATTGAATGCATCGCACTGGACGAGACCA 5509 Query 6368 TGACCTCGGTCGAGTGC 6384 | ||| | | | ||||| Sbjct 5510 TCACCACCGACCAGTGC 5526 Score = 87.8 bits (96), Expect = 4e-13 Identities = 209/310 (67%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||| ||||| | ||| | || || ||||| ||| ||| | || Sbjct 255 ATCCAACCGCCCGCCCAAACAACACGTCCCACAATCTCTAGGTCATTCAGGTTTTCTTTA 314 Query 237 GGGACGATCATT-TCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAA 295 | || |||| || | ||| ||| |||| | ||||| | | || ||| | | Sbjct 315 GAAACCTTCATGGTCTG-ATAAGCCGCGTTTGCGCTGATAACTGCTACGCCACCGCCAAT 373 Query 296 GCGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGA---CTGC 352 | | |||||| ||||| || || ||||||||||||| ||||| ||||||| || | Sbjct 374 CTGGCGTTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCTTC 433 Query 353 CGCGTCTTGGACCGTTG--ACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGC 410 | | || || | |||| ||| ||| || | | ||| || || ||||| | |||| Sbjct 434 CCCTTCCAGG-CTGTTGCGACT----GTGGTCGATCAACACAGTGTCGCCATCACTCAGC 488 Query 411 AGAGGCTCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCC 470 | |||||||||||||||| | | ||||| || |||| | || || ||||| ||| Sbjct 489 ACCCCCTCCATAGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCC 548 Query 471 TTTTTTCGCA 480 | || |||| Sbjct 549 TGCTTGCGCA 558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118024735091400