Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq12390 389 1e-103 seq32405 187 8e-43 seq8567 114 4e-21 seq17687 100 9e-17 seq8568 93.3 1e-14 >seq12390 Length=60018 Score = 389 bits (430), Expect = 1e-103 Identities = 689/998 (69%), Gaps = 35/998 (4%) Strand=Plus/Minus Query 2690 TCGACTTCAAAACCCAGTACGGCCTGGCCCTGGACGACACCGACGACGCGATTATCGTCG 2749 |||| ||||||||||| ||||| || | | | || ||||||| ||| | |||| Sbjct 56375 TCGATTTCAAAACCCAATACGGACTCGGCTTCAACCCTCAGGACGACGAGATCGTTGTCG 56316 Query 2750 ACCTGTTCGCCGGCGGCGGCGGTGCCAGCACCGGTCTGGAAATGGGCCTGGGCCGCAAGG 2809 || | ||| || || ||||| ||| | ||||| ||||||||||||||||||||| || Sbjct 56315 ACTTCTTCTGTGGTGGTGGCGGCGCCGGTACCGGGCTGGAAATGGGCCTGGGCCGCGCGG 56256 Query 2810 TCGACCTGGCCATCAACCACAATCCGGCGGCGATCAGCATGCACGAGGCAAACCACCCGC 2869 | || | || | ||||||| ||| ||||||||||||||| | || ||||| Sbjct 56255 TAAACGTCGCGAAGAACCACAGCCCGCAAGCGATCAGCATGCACACCGTGAATCACCCAG 56196 Query 2870 ACGCCGAGCATCTGCCGACCGATGTCTG---GGGT-ATC--GACCCCATCGCGAGCACGA 2923 |||| |||| | | ||||| || | |||| ||| ||| || ||| || Sbjct 56195 GCGCCAAGCACTTCACCACCGACGTGTTCGAGGGTGATCCGGACACC-----GAGTGCGG 56141 Query 2924 AGGGCAAGACCGTGGGCTGGCTGCACGCCTCCCCGGACTGCCGGCATCACAGCCAAGCCG 2983 ||||||| |||| |||||| | ||| || ||||||||| ||| ||||||||||| | Sbjct 56140 -GGGCAAGGCCGTCGGCTGGTTCCACATGTCACCGGACTGCACGCACCACAGCCAAGCGG 56082 Query 2984 CAGGCGGCCAGCCGCGGAAGAAGGAGATCCGCGACCTAAGCTGGGTGGTGATCAAATGGG 3043 ||||||| |||||||| ||| ||||||||| |||| ||| | | | ||||||||| Sbjct 56081 CAGGCGGACAGCCGCGCAAGCGCGAGATCCGCAACCTTTCATGGATCGGGCTCAAATGGG 56022 Query 3044 CTGGCACGCTCCACAAGCTCGGCCGCGGGCCGTGGGTCATCAGCCTGGAGAACGTGAAGC 3103 | |||| | |||| |||| |||| |||||||||||||||||||| | Sbjct 56021 CAGGCATG------AAGC---------GGCCCAGGGTGATCAGCCTGGAGAACGTGAAAC 55977 Query 3104 AAATCCTTCAATGGGGCCCGCTGATCGCCAAACGCGACAAGTCGACCGGCCGCGTCGTGC 3163 | ||||| |||||||||| | |||||||||| ||||||||| | ||||||||||| || Sbjct 55976 AGATCCTGCAATGGGGCCGGTTGATCGCCAAGCGCGACAAGGCCACCGGCCGCGTGGTTA 55917 Query 3164 GCCTCGACGGCACTGTAGCCGGTCCCGGCGAACGGGTGCCGCGGCACGAGCAGTTCCTGG 3223 || ||||||| | | || | || |||||| || ||| | | ||||||||||| Sbjct 55916 AGCTGGACGGCAATATTGCTGCACCTGGCGAAGTCGTACCGGTGGGCCAGCAGTTCCTGA 55857 Query 3224 TGCCCGATCCGAAACGCAAGGGCCGCACCTGGCGTCAGTTCCTGCGCGCCCTGGAAGGCT 3283 | ||||| ||||| | |||||||||||||| | ||| || | ||||||||| Sbjct 55856 TCCCCGACCCGAAGCAGCGCGGCCGCACCTGGCGCCGCTTCGTGGCCTTGCTGGAAGGCA 55797 Query 3284 TCGGCTACCACGTCGACTATTGGGTCGAGCGCAACTGCGACTACGGCGACCCGACCACTC 3343 | ||||| ||| || | ||| || ||||||| ||||| ||||||| | Sbjct 55796 TGGGCTATGTCGTTGAGTGGAAGGTGATTCGGGCTTGCGACTTCGGCGCGCCGACCAGCC 55737 Query 3344 GCCAGCGCCTGTACCTGGTGGCCACCGACGGCGGT--TTCGAGCCTGTGGCGGCGGAGAA 3401 | | ||||||| | || | ||| || |||| | | | |||||| | ||| Sbjct 55736 GGGAACGCCTGTTCATGATTGCCCGGTGCGACGGTCAGCCAATCGTGTGGC--CCGAGCC 55679 Query 3402 GACCCATGCCGCGAAGCCCGGCAAGGGGCTGAAACCGTACCGCACGGCAGCAGAGTGCAT 3461 ||||| ||| ||| || | |||||| | | || || || || || || ||||| Sbjct 55678 AACCCACGCCAAGAACCCGGTCAAGGGTCAGCAAAAGTGGAAAACTGCCGCTGACTGCAT 55619 Query 3462 CGATTGGAGCGACCTCGGCCAGTCGATCCGCAACCGGAAGAAGCCGCTGGCGGAGGCCAC 3521 ||| | | |||||| || | ||| | ||| ||||| ||||| |||||| Sbjct 55618 CGACTTCACCGACCTGGGAAAAAGCATCTTCGGCCGCAAGAAAGACCTGGCCCCGGCCAC 55559 Query 3522 CATGCGCCGCATCGCGAAGGGTATCGAGAAAGAAGTGCTC--CAGCGCGCCAAGCCCTTC 3579 | |||||||| | || ||||| || |||| || || |||||| || || ||| Sbjct 55558 CCTGCGCCGCGTTGCCAAGGGCATGAAGAAGTTCGTCATCGATAGCGCGGCA--CCGTTC 55501 Query 3580 ATCGTGCCGATCGCGAACTGGTCGCGCGAAGCCGTGCATCCGGTTGACCAGCCGCTGAAC 3639 || |||||||| || |||||||| | ||| | ||||| | | ||| |||||||| | Sbjct 55500 ATTGTGCCGATAGCCAACTGGTCAGGGGAAACGGTGCAGTCTGCCGACGAGCCGCTGCGC 55441 Query 3640 ACCATCACTGCCTGGCCGAAGGGTGGCGCTTTCTCCGT 3677 ||| |||| ||| || ||||| ||||| ||||| || Sbjct 55440 ACCGTCACCTCCTACCCAAAGGGCGGCGCCTTCTCGGT 55403 Score = 315 bits (348), Expect = 2e-81 Identities = 555/797 (70%), Gaps = 24/797 (3%) Strand=Plus/Minus Query 3920 TGGCCAGCGCGGTTCTGGTGGGTGCCGGAGGCCCCAGCTACGCCGGTAAGCCCGTCTCGG 3979 || ||||| | || ||||||||||| || || || || |||||| | || || | | Sbjct 55178 TGACCAGCTCAGTCCTGGTGGGTGCTGGTGGGCCGGTATATGCCGGTCACCCAGTTACAG 55119 Query 3980 TCGACCAGCCCATGGGCACCGTTGTAGCCGAAAACCATCGCGCCATCGCCACTGCCTTCC 4039 || ||||| | || || | | | | || ||||| | ||||| |||||| Sbjct 55118 CAGATCAGCCGGTCGGTACGCTCATGACACGCAGTCACCGCGCGGTGGCCACCGCCTTCA 55059 Query 4040 TCGCCCAGATGAACGGCGGCTACAACACGACCTTCAGCCGGCCGGCCGACGCGCCGATGA 4099 | ||||||||||| || |||| |||||| ||| | | | ||| | ||||||| Sbjct 55058 TGGCCCAGATGAATGGTGGCTTCAACACCACCGACGCCAAGAGCATCGAGGACCCGATGA 54999 Query 4100 GCACGGTCACGAACAGCGGCAGCCAGCAGCAGTTGGTCACCGCTCACTTGCTGCACCTGC 4159 |||||| || |||| |||||||||||| ||| || | | || || || ||||| | | Sbjct 54998 CCACGGTGACCAACACCGGCAGCCAGCAACAGCTGTTGGCGGCGAACCTGGTGCACTTTC 54939 Query 4160 GCGGTAACTGCGACGCGCGCGCCGCCGACGAACCGCTGCACACAGTCAGCGCAGGTGGGC 4219 |||| |||||||| || || | |||| | || ||||||||||| |||||||| || || | Sbjct 54938 GCGGCAACTGCGATGCACGGGACGCCAATGACCCGCTGCACACCGTCAGCGCCGGCGGCC 54879 Query 4220 AGCACCACGGCCTGGTCAGCGCCCTGCTGGTGACGAATACCACCGGCCACAGCAGCACGC 4279 |||||||||| |||||||||| | ||| | | | |||| ||| | || Sbjct 54878 AGCACCACGGGTTGGTCAGCGCATTCATGGAGCGGG---CATTCGGCGGCAGT-GTTGGC 54823 Query 4280 C--GGC--GGACCAGCCGGCGCCTACCGTGGCAACCGGCGGTCACCACATGCTGGTCACG 4335 | ||| ||| | |||||||| ||| | | |||| || | || | || || Sbjct 54822 CAGGGCCTGGAAGACCCGGCGCCGACCATCACCGCCGGTGGCGGCGGCAAGA--GTT-CG 54766 Query 4336 CCGGAAATGATCGCCGGCAGCCTCACACCCGAGCAGTTGGACGGCGCCGTGTGGGTGGCG 4395 | || || |||| || ||| ||||| ||||| | |||||| || | || || Sbjct 54765 CTGG---TG-TCGCT--CACCCTAACACCAGAGCACGAAGCGGGCGCCCTGCGCGTTGCC 54712 Query 4396 GCGTTCCTAATGAAGTACCACGGCATGGGCGAGAACATCCGTCCGCTGG--ACGAGCCGG 4453 || ||||| || | ||| |||||| |||||||||| | |||| | | | ||||| Sbjct 54711 GCCTTCCTGATCAGCTACTACGGCAC---CGAGAACATCAG--CGCTTGCGATGCGCCGG 54657 Query 4454 TCAGCACCGTGACCACCAAGGACCGGCTGGCCCTGGTCACCGTGTGGATCAGCGGCAGCC 4513 ||| | ||||||||||||||||||||| ||||||| || | ||| |||| | Sbjct 54656 CGCCGACCATCACCACCAAGGACCGGCTGGCCATGGTCACTGTCATGGTCAAGGGCACGC 54597 Query 4514 CCTACGTGATCGTCGACATCCGATTGCGGATGCTGAAACCGCGTGAGTTGTACCGCGCCC 4573 |||||||||||||||||||| | ||||||||||||| ||| ||| ||||| |||| Sbjct 54596 CCTACGTGATCGTCGACATCTGCCTGCGGATGCTGAAGCCGTCCGAGCTGTACAAGGCCC 54537 Query 4574 AGGGCTTCCCCGACAGCTACATCATCGAGCGGGGCCACAACGGGCAGCGGTTCACTCTAT 4633 |||||||||| | | |||||||||| | ||| |||| ||| |||||| Sbjct 54536 AGGGCTTCCCTGCCGACTACATCATCACCCACGGCGCGGACGGAAAGCCGTTCACCAAGA 54477 Query 4634 CCCAGCAGGTCCACATGTGCGGCAACAGCGTGAGCCCGAACACGATGGCCGCATACGCCC 4693 |||||||||| |||||||||||||||||||| |||||| ||||||| || | || | Sbjct 54476 CCCAGCAGGTGCACATGTGCGGCAACAGCGTCAGCCCGCCGCCGATGGCAGCGTTGGCAC 54417 Query 4694 GGGCGAACGACCCATGG 4710 | || ||||| || ||| Sbjct 54416 GTGCAAACGATCCGTGG 54400 Score = 82.4 bits (90), Expect = 2e-11 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 3685 CCAACGCTGATCCAAGTCGGC-TACGGCGAGCGCGACGGCCAGGCGCCCCGCGTCCCCGG 3743 || ||||| || || ||||| ||||| |||||| ||||| | ||| | || || || Sbjct 55287 CCTACGCTTATTCA-GTCGGGATACGGTGAGCGCCCAGGCCAAGAGCCAAGAGTGCCAGG 55229 Query 3744 GCTCGACAAGCCCCTCGGCACGGTGGTCGCCGGCGGCATCAAGCACGCG 3792 || ||| |||| || ||||||||||||||||||||| | ||||||||| Sbjct 55228 CCTGGACCAGCCGCTGGGCACGGTGGTCGCCGGCGGCGTTAAGCACGCG 55180 >seq32405 Length=7639 Score = 187 bits (206), Expect = 8e-43 Identities = 281/393 (72%), Gaps = 16/393 (4%) Strand=Plus/Plus Query 33921 GCCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC- 33979 |||||| || || | |||||| || | ||| ||||| | ||| || || |||| Sbjct 2706 GCCCGGCGCCAGGTTCTCGAAGCGGGTGTATTTACCGATGAAGGCCAGGCGCGTGGTGCC 2765 Query 33980 --TTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT 34037 ||||| ||||| || || || |||| || | ||||| | ||| | || ||| Sbjct 2766 GATTGGC---CCGTTACGCTGTTTACCGATAATGATTTCAGCGATGCCTTTATGCTCGGT 2822 Query 34038 GTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGAT 34097 ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 2823 CTCCGGGTGATACACCTCGTCCCGGTATACGAACATGATCACGTCAGCATCCTGCTCGAT 2882 Query 34098 CGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGA 34157 ||| ||||| || |||| ||| || | ||||| || |||||||| |||||||| || || Sbjct 2883 CGCTCCGGATTCCCGCAAGTCGGAGTTGATCGGGCGTTTGTTCGGACGCTGCTCAAGAGA 2942 Query 34158 GCGGTTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGC- 34216 ||||||||||||||||| | | ||| ||| | ||| ||||||| |||| | Sbjct 2943 TCGGTTGAGCTGCGACAGGGCAACCACCGGGCAGTTGAATTCCTTGGCCAG-GGCTTTCA 3001 Query 34217 ACTGGCGGGACATGTCGCTGACGTCCTCGGTGCGAGTTGAC-TTGCCGGAGC------TC 34269 || |||||| || ||| | || | ||| || | || | || ||||| || Sbjct 3002 ACGAGCGGGAAATCTCGGAAATCTCGTTGGTCCG-GCTGTCACCGCTGGAGCCCGGGATC 3060 Query 34270 TCCAGCAACTGCAGGTAGTCCACCACCAGCAGG 34302 | || ||||||||||||||| | || | |||| Sbjct 3061 TGCATCAACTGCAGGTAGTCGATCATGATCAGG 3093 >seq8567 Length=29384 Score = 114 bits (126), Expect = 4e-21 Identities = 178/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 38611 TTCTGGCTGGAGGTGAAGGGGGATTCGATGACGGCCCCGGCCGGCGAGAGCATTCCGGAA 38670 ||||||||| ||| || || || ||||||||||| || |||||| ||||||| | ||| Sbjct 25581 TTCTGGCTGACGGTCAAAGGTGACTCGATGACGGCGCCCGCCGGCCAGAGCATCACCGAA 25640 Query 38671 GGCATGCTGATTCTCGTCGACACCG-GGCTCGAGCCGAGGCCTGGCGATCTGGTGGTTGC 38729 || | |||||| || || || || | |||| ||| ||| || | ||||| || || Sbjct 25641 GGTACGCTGATCCTGGTGGATACTGAGGCT-GAGGTTTCGCCAGGTAAGCTGGTCGTGGC 25699 Query 38730 GAAGCTGGCCGACAGCAACGAGGCAACCTTCAAACAGTTCGTGTCCGACGCAGGCCAGAA 38789 |||||| | ||||||||||| || || ||||| || | || ||| | || | | Sbjct 25700 GAAGCTCCCGGACAGCAACGAAGCCACATTCAAGAAGCTGGTCAGCGATGGCGGACGGCT 25759 Query 38790 GTACTTGAAACCCCTGAACCCCGCATATCGCATGCTATCCATCGACGACAACTGCGAGAT 38849 || | ||||||| |||||||| || | ||| || ||||||| ||||| ||| Sbjct 25760 GTTCCTGAAACCTCTGAACCCGAGCTACCCCATCGAGGCCGTCGACGAGAACTGTCGGAT 25819 Query 38850 GGTCGGCGTTGT 38861 || ||||| || Sbjct 25820 CGTGGGCGTGGT 25831 >seq17687 Length=17369 Score = 100 bits (110), Expect = 9e-17 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 47934 AGTTCGTCCGCGAAACCCGGCGAGCGTCGATTTCGGCGATCCAGCGCAAGCTGAAGATCG 47993 ||||||| | |||| ||| || || ||||| || || | ||||||||||||||||| | Sbjct 5320 AGTTCGTGCTTGAAAGCCGCCGCGCCTCGATCTCCGCCGTACAGCGCAAGCTGAAGATTG 5261 Query 47994 GCTACAACCGCGCAGCCCGCATCATCGAGCGGATGGAGAAAGAAGGCGTAGTCACAGCGG 48053 ||||||||||||| |||||||| ||||| ||||| | | ||||| ||||| || Sbjct 5260 GCTACAACCGCGCTGCCCGCATGATCGAAGCCATGGAAATGGCCGGCGTGGTCACCTCGA 5201 Query 48054 CCGACAGCAACGGCGGCCGCGAGGT 48078 ||| ||||||| ||||| || Sbjct 5200 TGAACACCAACGGCTCGCGCGAAGT 5176 >seq8568 Length=11274 Score = 93.3 bits (102), Expect = 1e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11889 GGCCGGCGTTCGGGAGGATTTGCAGCAGTTGCTGCTCAGTGATAGGCATTCTGATCTCCA 11948 ||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||||| Sbjct 437 GGCCGGCGTTCGGGAGGATCTGCAGCAGCTGCTGCTCAGTGATCGGCATGCTTTTCTCCA 378 Query 11949 GGCACAAAAAAGCC 11962 |||| ||||| || Sbjct 377 GGCAATAAAAAACC 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160388898134370