Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq8416 398 2e-106 >seq8416 Length=35894 Score = 398 bits (440), Expect = 2e-106 Identities = 1073/1620 (66%), Gaps = 70/1620 (4%) Strand=Plus/Plus Query 179 ATCCAGCGGCCTGACCATACGACGCGCCCGATAATGTCGATTGCTTCCAAGTCTTGCTTA 238 ||||| | ||| | ||| || || || || | ||| || | | | || || || ||| Sbjct 255 ATCCAACCGCCCGCCCAAACAACACGTCCCACAATCTCTAGGTCATTCAGGTTTTCTTTA 314 Query 239 GACACGAACATTGTCTGATAGGCCGGATTAGCACTGATGATCGCCAGGCCGCCATTGATC 298 || || ||| |||||||| |||| || || ||||| | || | ||| || ||| Sbjct 315 GAAACCTTCATGGTCTGATAAGCCGCGTTTGCGCTGATAACTGCTACGCCACCGCCAATC 374 Query 299 TGCCGCTGGACGCGCTTGGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGCTTCG 358 || || || | ||||||||||||| |||||||||| ||| || ||||||| ||||| Sbjct 375 TGGCGTTGCAGCCGCTTGGCGTACAGATGGTCATCCAAGCGAATAACGTAGATGGCTTCC 434 Query 359 TCA-CGAACCTCATTGCAACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAGTGG 417 | | | || |||| ||||||||| |||| ||| || |||||||| |||| || Sbjct 435 CCTTCCAGGCTG-TTGCGACTGTGGTCGATCAACACAGTGTCGCCATCACTCAGCACCCC 493 Query 418 CTCCATTGAGTCACCGCCGATGCGGACGGCCGACATATTCGCGATCTCCAGGCCTTGCTT 477 |||||| ||||||||| | | |||| ||||| | |||| ||||| || ||||| Sbjct 494 CTCCATAGAGTCACCGTCCACCCGGATAGCCGAGAGCTTCGACGGCTCCAATCCCTGCTT 553 Query 478 CCGCAAGCTGTAGCGAGTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTCCAGGA 537 ||||| ||| || || |||| || | || | | | |||||||||||||| | Sbjct 554 GCGCAATGAGTAAGTGGTAAAAGCCAGGTGCGTAAGAACCCGAGCCCCCTCTGTCCATGC 613 Query 538 GCCGTGACCAGCGC-GCACCCGAGCGTCATACAGAGGGATATAGGCGTAATTGTCGTCTC 596 |||||||| || | ||| | ||||||| || || |||| |||| ||| ||||| || Sbjct 614 CCCGTGACCGGCACTGCAAC-GAGCGTCGTAAAGGGGGACATAGCTGTATTTGTCATC-- 670 Query 597 CCTTCTCGCGACTATCTTCCGCAGGTATAGGGGTGC----CGAAAGCCAGCCACATAGCG 652 ||| | || | ||||| | | ||| ||| |||| ||||||||||| || Sbjct 671 ----CTC---AATAACAAGCGCAG-TCTGGGGCTGCTCACCGAACGCCAGCCACATCGCC 722 Query 653 GAAGTCCCTGCGGCCTGGGCGATCTGCTCAAGTCGATCCAAGGTTGGGAAAGTCTCCCCC 712 || | || |||||||| |||||||| || | || | || || | ||||| || Sbjct 723 GACACATCAGCCGCCTGGGCAATCTGCTCCAGCCTGTCGAGAGTAGGATACGTCTCTCCG 782 Query 713 GACAGATAACTGCGCAGGGTCGCCTCGGACAAGCCGCATTCCTTAGAAAATCCTCGCAA- 771 |||||||||||| | | | |||| || | || | || | ||| | ||| Sbjct 783 CTCAGATAACTGCGTATAGCCCCCTCAGAAAGGCTTGAGTCGCGCGCAAAAACGCGCGCC 842 Query 772 GCTATGCGAGGAAATCGCCTGCTTCAGACGGATTTT---GAAGTATCCGATTCCATCCTG 828 ||| | | ||||| | ||| || | ||| ||| |||||||| | || Sbjct 843 GCTCTA-GTCCCCATCGCTTCCTTAAGTC---TTTCACGGAAACATCCGATTGCCCCCGA 898 Query 829 AGGAATCGGATGCCCAGACAATTCAG--TCGGTGCGCCATCCGTTTGTTCGTAACCCATT 886 |||||||||||| | | || || || ||||| || | |||| |||| Sbjct 899 TGGAATCGGATGCTGCGTTCCTGAAGCATCCGTTTT--ATCCGATTCCTTGTAAGTCATT 956 Query 887 GATTTTCCTAGT---ATTCATAGTTTTTCTGCGCACGGGTGCGAAGAAAAACTAAACGGA 943 ||||| || || |||||| ||||| | || || || | ||||| || |||| Sbjct 957 GATTTATCTCGTTCTATTCAT---TTTTCCGAGCGCGCCA-CGCATAAAAAAGAATCGGA 1012 Query 944 TGAGTGGAAATCCG-TTGCTGTGCGAGGATTTTCTCGCTATGTTTATGCCCTAAGTCACG 1002 || | |||| ||| | |||| | | | |||||||||||| | | | ||| Sbjct 1013 TGCTCGTTTTTCCGATTGATATGCGCATTTATCCGCGCTATGTTTATCCGCAACAGGACG 1072 Query 1003 TTAGACACCCCaaaaaaaCCACCCTGCACGGTGGTTGAGATGGAACGTAGGCATGAACAG 1062 |||||| |||||||||||||||| | | ||||| | | || |||| | Sbjct 1073 TTAGACGTCCCAAAAAAACCACCCGTGAAGATGGTTCAAA----ACT-----ATGAGCGA 1123 Query 1063 AACCGAAATACCCCGCGACAACAACGTCCGCTGGGAGTGGATCAAATACCAGCTCCGCGC 1122 | ||| || ||| ||| | ||| |||||||||||||||||||| ||||||| Sbjct 1124 TATCGACATGCCCACTGACCCTACTAGCCGATGGGAGTGGATCAAATACCAACTCCGCGT 1183 Query 1123 CAGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCCCTCGACGTATCCAGCCCGGCAGTCAA 1182 |||| | || |||| || | || || || || || | | ||| || Sbjct 1184 ACGGGGCACCTCAATGGCGAAGCTTGCTCGTCAGCTTGAGGTCACTGATCGCGCAATCCG 1243 Query 1183 AAACGCCAAGCTGAATCCCTACCCTCGGGTAGAGCGCGCCATCGCCGCTGTGCTCGACCT 1242 |||||||| | |||||| || || | || || || | || | || || ||| Sbjct 1244 CAACGCCAAAAGCACTCCCTATCCGCGCATCGAACGGTCCCTTGCTGATGCTCTGTGCCT 1303 Query 1243 C-AGCCCCCTGGTGCTGTGGCCTGAGCGCTGGCTCGACGACGAGAATCCGAAGCGGCAAC 1301 |||| | | | ||||| ||||||||| || ||| | | ||| | ||||||| Sbjct 1304 TGAGCCTTCCGACA-TCTGGCCAGAGCGCTGGAACGCCGATGGCACTCCACACCGGCAAC 1362 Query 1302 GGCCCAATCGTTCGGAAACCCTCAAGGCATATGACAGTGTCATATGCCGATCCGGGAAAA 1361 |||| || |||||| || | | || ||| | ||| |||| Sbjct 1363 GGCCTGGGCGCGCGGAAATAAACACGTCCTACAACAAGG--ATA-------CCGG----- 1408 Query 1362 ATAACAGATACGCTGACCAAGCGCAGCGTAAAGCCGACGCGGGGGCTTGAACATGGCCCG 1421 | |||||| || | | || ||||||| | | | || |||||||| Sbjct 1409 ACAACAGA--CGGTT-----GGACACTGTAAAGCGGCAAGGAGTGCCTGAACATGCGTAA 1461 Query 1422 CCGCAAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCAGCTCGCGCTATACC 1481 || ||||| ||| | || | ||||||||| |||||||||||| | | ||||||| Sbjct 1462 CCAAAAAGATGACAGAACATTAGACATCTTCTCTGTTCCGCAGCCGGTGCTTTCTATACC 1521 Query 1482 CGGTGAGTGCAACTACGCCGCCCAGGTCAGCGAACTGGTCAGCGAAATACTGAAGGCCGC 1541 |||| | ||||||| ||||||||||||||||| |||||||||||| | || || | | Sbjct 1522 CGGTCACGGCAACTATGCCGCCCAGGTCAGCGAGCTGGTCAGCGAAGTCCTCAAAGAGTC 1581 Query 1542 CAACCTCGACCGTTACGAGATTGCCGCCCGCATGTCGCGCCTCTCCGGCGATGACGTGAG 1601 | || | ||||| || |||||||| || |||||||| ||||| || ||||| ||||| || Sbjct 1582 CGACTTGGACCGCTATGAGATTGCGGCTCGCATGTCACGCCTTTCGGGCGACGACGTTAG 1641 Query 1602 CAAGAACATGCTCGACGCCTGGTCGAGTCCCGCCCGAGTTGATCACAACTTGCCTTTCTA 1661 |||||||||| | ||||||||||| ||||| ||||| | ||||||||| | ||| | || Sbjct 1642 CAAGAACATGTTAGACGCCTGGTCAAGTCCTGCCCGTGCAGATCACAACCTACCTCTGTA 1701 Query 1662 CCGCGCCGCCCTCCTGGAAGACGTCTGCGCGAGCCACCTGCTGACCAACTGGCTGGTCGA 1721 || || || | ||||| || ||||| || ||||| | ||||| || |||| || | Sbjct 1702 TCGAGCTGCTTTGCTGGAGGAAGTCTGTGCAAGCCATGTCCTGACGAATTGGCAAGTACA 1761 Query 1722 TGTGCGGGGTGGCCGCGTGGCCTATGGCCGAGACGCACTGCTCGCCGAACTGGGCCGCCT 1781 |||| |||||||| || || ||||| || || || ||| ||| ||| | || ||||| Sbjct 1762 CCTGCGCGGTGGCCGGGTCGCTTATGGGCGCGAGGCTCTGGACGCGGAAATAGGTCGCCT 1821 Score = 167 bits (184), Expect = 5e-37 Identities = 483/724 (67%), Gaps = 52/724 (7%) Strand=Plus/Plus Query 8844 AGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGATG 8903 ||||||||||||||||| | || |||||||||||||||||||||| |||||||||||||| Sbjct 8689 AGCGAAACCGCCCCGGCGT-GCTGGGACGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 8747 Query 8904 AGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCGCGGGA 8961 |||||||||||||||| ||||| ||| | |||| ||||| |||||||| || || Sbjct 8748 AGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCCAAACCCGCCTGGCACGCGA 8805 Query 8962 ACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTCGCGC--TGCGCTGGGCGGCCGC 9019 ||| |||| || |||| ||||||| | || |||| || |||| | | || Sbjct 8806 ACGTAAACGTGCCCAGCGTAAGCGCGA--CAGTGAAAAGCGCCTGGCTATGGGGGCCAGC 8863 Query 9020 CGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCC 9079 |||| ||||| || ||| || || | | || || | |||| || | ||| Sbjct 8864 AAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCGCACTGCC 8923 Query 9080 GGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGAAAT- 9138 ||| | |||| ||| | | | ||| |||| || | | || || |||| | | Sbjct 8924 GGTAGATTCGACGAAACAGAGCATGCGCTCACGATGGCCATTCATGGTGTCGCCGCATTG 8983 Query 9139 TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCCATCCAGG 9195 | | || | ||| || || |||| || || |||| |||| || | Sbjct 8984 TCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGA------------G 9026 Query 9196 GAGGACCAAGCGATGAGCCTACGCG---CCGTCAACCTCGCAAAAATCCACATCGCCAAG 9252 || ||| || || |||| || || ||| || || ||||||||||||||| Sbjct 9027 GAAGAC--AGTGA-----CTACACGTAACCTGCAATTGAGC-AAGATCCACATCGCCAAG 9078 Query 9253 GCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGGCGTG 9312 | || || |||| ||||| ||||| ||||| ||| ||| ||||| || | ||| Sbjct 9079 AAGGACCTTGGGCTGGATGATGAAACCTACCGCGCCTTGTTGGGCCGCGTGGCAGATGTG 9138 Query 9313 CGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCAGCGC 9372 || |||||||| || | ||| |||||||||| | ||||||| ||| || ||| Sbjct 9139 CGTTCGGCCAAAGATCTGACGCCACGCCAGATCGGCGCGGTACTGGCCGAGTTCGCTCGC 9198 Query 9373 CTGGGCTGGAAAC---CGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGTGCCG--- 9426 ||||||||| | | | ||| || ||| || | || | | || |||| || Sbjct 9199 CTGGGCTGGGAGCCTACAAAGGCTAAAAAGCAAGG--GCGCAAAG-CACCAGTGGCGGCT 9255 Query 9427 CAAAACCG-GCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCGCCC 9485 | | |||| | ||| | || || | ||||| || | || || || | || | Sbjct 9256 CCAGACCGTGTAAAAC-TGGTGGGGAAAATAGAGGCCTTTCTCTCCGAGGCAAAGCGTTC 9314 Query 9486 CTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTGGCT 9545 |||| ||| |||||| ||||||| |||||||||| ||||||| || ||||| ||||| Sbjct 9315 CTGGGCCTATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAACGCGTCGAATGGCT 9374 Query 9546 GGAC 9549 ||| Sbjct 9375 AGAC 9378 Score = 131 bits (144), Expect = 4e-26 Identities = 318/473 (67%), Gaps = 29/473 (6%) Strand=Plus/Plus Query 2760 GCATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGTGACTTCACCAAGC---TGCTCCC 2816 ||| ||| |||| || |||| || |||| ||||| || ||||||| || ||| Sbjct 2615 GCAGGAACTCAAAGCCCTGCAACCATTCAAGCGCCG---CTCCACCAAGAGCATGTACCC 2671 Query 2817 GACCGACGTCTATTCCTGCGACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 2876 | |||||| | || ||||||||||| ||| || || ||||| | |||| | ||| Sbjct 2672 GTGCGACGTATTCACCGCCGACGGCCACAAGTTTGATGCAGAGGTATTGAACCC-ACGCA 2730 Query 2877 C-GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTC 2935 | ||| ||| | ||| |||||| |||||| || |||| || ||| || || | Sbjct 2731 CCGGCAAGCCTTACCGCCCGGAAGCAACCACCGTCCTCGATGTCGCTACTCGC--AAGGC 2788 Query 2936 CG--GGATGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTTGTCGATGCCCTGCGCGA 2993 || || |||| || ||||||||| || | | ||| | || |||||||| || Sbjct 2789 CGTGGGTATTTCCATTGGTGAGGCCGAGTCCACCATCGGCGTTATGGACGCCCTGCGTGA 2848 Query 2994 CGCC-TGCACCAAGGGCGGCATTCCGGCCATCTTCTACGTGGACAACGGCTCAGGCTACG 3052 |||| |||| || |||||| || | |||||||| |||||||| || |||| | Sbjct 2849 CGCCATGCAGCA----CGGCATGTTTGCGGTGTTCTACGTTGACAACGGTTCCGGCTTTG 2904 Query 3053 TAAACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGACATGA 3112 ||| ||| | || || | | ||| || | | ||| |||| |||| Sbjct 2905 CCAACGACACCGTACGTGAAGTAG---TCGACCGTCTCGGC------GGCACT---ATGA 2952 Query 3113 AAAACAGCCTGCCCTACAACAGCCAGGCGCGGGGCGTGATTGAGCGCGTCCACCAGAGCC 3172 | | ||||||||||||||||||| || ||| | |||||||| |||||| | Sbjct 2953 CCCATGCCTTGCCCTACAACAGCCAGGCCCGCGGCCTCATTGAGCGTTCCCACCAAACGA 3012 Query 3173 TGTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGAC 3225 | ||| | || |||||| | ||| || ||||||||||||||||||||||| Sbjct 3013 TTTGGGTCAATGCAGCCAAGAAGCTGACCAGCTACATCGGCGCCGACATGGAC 3065 Score = 86.0 bits (94), Expect = 1e-12 Identities = 389/604 (64%), Gaps = 26/604 (4%) Strand=Plus/Plus Query 6414 TGCTCGCCGCTGAGGTGGCCCGCAGCAGCCAGACGAAGGCCGGCGAGGCAATCGGCATGA 6473 |||| ||||| || || ||| ||||| | || |||||| | || |||||||||| Sbjct 5330 TGCTTGCCGCCGAAGTTGCCGCCAGCAATAAAACCAAGGCCAGTCAGCGCATCGGCATGA 5389 Query 6474 GCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGTCGCCCTCGACGATCCGCG 6533 |||| | |||||||| ||||| |||||||||||| |||||| || ||| Sbjct 5390 GCCGCACAGCCGTCAGCTTGATCCTGGCCAACCGCTACAGCTCGCCCAGCACCTCTGGCG 5449 Query 6534 TCGAGCGTCGTGTCCTGGCCGCGCTGAGCCGCATTGAGTGCCCGGCCCTGGGCGAGGCGG 6593 |||||||||| || ||| | ||| | || ||||| ||| || |||| |||| | Sbjct 5450 TCGAGCGTCGGGTAATGGAAACCCTGGGGCGAATTGAATGCATCGCACTGGACGAGACCA 5509 Query 6594 TGACCTCGGTCGAGTG---TAGCGAGTACCTCCAGCGGCCGGCGCCGCTGAACAACCCCG 6650 | ||| | | | |||| ||| |||| | | || || ||| ||||||| Sbjct 5510 TCACCACCGACCAGTGCCAAAGC---TACCGCGAAAAACCCGCACCGACCCACAACCCGC 5566 Query 6651 TCGCGATGCGCTGCTGGAAAGCGTGCCGCGCCTGTCCACGCAA-CCCGCATACCGCCCCC 6709 ||||||| |||| || |||| ||| ||| ||| |||| | | || || Sbjct 5567 AGGCGATGCAGCACTGGCGCGCCTGCCAACACTGCCCAATCAACCCCGACTGCTGCAACC 5626 Query 6710 ATGA-AACG-AGAGGAACAAGGCCATGAGAACCGCATTGCCCTTGAAAGTCTTGACGCCT 6767 | || |||| | | | ||| || ||| | | || ||||||||| |||| || Sbjct 5627 AGGAGAACGCTCATGCTCGCCTCCACTAG--CCGTAAT-CCGTTGAAAGTCCTGACTCCG 5683 Query 6768 GACTTGGCCATGAGCCTGCGCACTTTCAACGATGCCGCCCGGCTGCTCCAGCGCATGGGG 6827 ||||| | ||||||| |||||||| |||||||| | ||| | ||| Sbjct 5684 TCGCTGGCCGACCGTCTGCGCATTTTCAACGCCGCCGCCCGCAACTTGCAGGCCCACGGG 5743 Query 6828 GTTCGCCTTCATCGCCTGGAGCCGACAGAGGGGCG---CGTGACCATCGCCGCAGATGAC 6884 ||||| | || || | | ||| | || || |||| || ||||| || Sbjct 5744 ATTCGCGTGCAGGGCTTTCATCCGGCTGATAACCGATTGGTGATCA-CGCCG-----GAA 5797 Query 6885 GCCCGCCAGCTCTTGGAGAA---AGGCTAC-CTGATGGGCTTCCAGCGCGACGCCTCGGC 6940 ||| | |||| || || ||| || | || ||||| || ||| ||| | |||| Sbjct 5798 GCCGGTCAGCGGCTGATCAACCTTGGCCACACCGA-GGGCTATCAACGCCACGGCACGGC 5856 Query 6941 CGGCAGCACCCGTTACATCACCCGCTTCCAGGGCATCACCCTGGCCTGGAGCGAACCGAT 7000 ||| |||||||||| || | | ||||||||| | ||||||| ||| ||||||| || Sbjct 5857 CGGTAGCACCCGTTTCAACGTGCAGTTCCAGGGCGTGACCCTGGAATGGCGCGAACCCAT 5916 Query 7001 CAGC 7004 ||| Sbjct 5917 TAGC 5920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117036397878846