Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq8567 401 2e-107 seq21847 176 1e-39 seq8565 140 1e-28 >seq8567 Length=29384 Score = 401 bits (444), Expect = 2e-107 Identities = 624/879 (71%), Gaps = 11/879 (1%) Strand=Plus/Minus Query 7045 CAATGAAGACCACGCCCACCTACAAGACGCTCCTCTCGCTTTCCTATGGGCTGCCTCCAG 7104 ||| |||||||| |||||||||| || || || || | ||||| | || || Sbjct 17262 CAACGAAGACCATGCCCACCTACTGGATGCAGACATCCGGGTCATGTGGGCGTCGTCGAG 17203 Query 7105 CTTCACCAAGCAGGGGAGGACGGTACTGGGTCAGTGCGAAGAGGTGACGTTCCGCTGTGG 7164 |||| || ||||| |||| || ||||| ||| ||| |||| |||| ||| || Sbjct 17202 CTTCGAGAAACAGGGTCGGACCGTCCTGGGCCAGGCCGAGCAGGTAGCGTTTCGCGCGGG 17143 Query 7165 AGCCTGGCAGAAGGGTAGGCAGGAACAGCAGATGATCCGTTGGTTCGGATACCTGCCGAG 7224 | |||||||| | | || |||||| |||||| ||||||||| | ||||| | Sbjct 17142 CGGTTGGCAGAAAGCTCGGATGGAACAACAGATGCGTGATTGGTTCGGCGATGTGCCG-G 17084 Query 7225 GTTTC-TGATCACCCTGGCTGCTGACTACTGCTCCCAGTGCTCCGACGCGGAGTTCTGCG 7283 |||| | |||||| ||||||| ||||||||| | |||||| |||| |||||||||| Sbjct 17083 CTTTCATCATCACCTTGGCTGCCGACTACTGCGCGCAGTGCAGCGACCTAGAGTTCTGCG 17024 Query 7284 CATTGGTCGAGCATGAGCTCTACCACATCTGCCAAGAGCACAACCAATATGGCGAGCCCA 7343 | || ||||||| ||||| || ||| | || | | | || |||| || | || Sbjct 17023 CTCTGATCGAGCACGAGCTGTATCACCTGGCTCACGCGACCGACAAATACGGTCAACCAG 16964 Query 7344 AGTTCACCGAGGAGGGCTTTCCAAAGCTGAAGCTCCGCGGGCATGACGTCGAGGAGTTCG 7403 |||||| | || |||| || ||| | ||||| | || || ||||| || ||||||| Sbjct 16963 CATTCACCCAAGACGGCTCGCCGAAGATCAAGCTGCAGGGCCACGACGTAGAAGAGTTCG 16904 Query 7404 TCGGCGTGGTGAGGCGGTACGGCCCAAGCAAGGACGTGCAGTATCTCATCGACGCTGCTA 7463 |||| || || | || ||||| | ||| ||||| || | | || ||||| | Sbjct 16903 TCGGTGTTGTCCGCCGCTACGGTGCGAGCCCTGACGTTCAAGCGTTGGTAGATGCTGCAA 16844 Query 7464 GCAGGCCTCCAGAGGTGGCCAAAATTAACATTTCGAGAGCCTGCGGTACGTGCCTGCTGA 7523 || ||| | ||||||| ||| | |||||| |||| |||||||| || || ||||| | Sbjct 16843 AAAGTCCTGCTGAGGTGGGGAAATTGAACATTGCGAGGGCCTGCGGAACCTGTCTGCTCA 16784 Query 7524 AGTCGGCATAG--CCACGACAGGCCCATGACAGGAAGAAAAACG-ATGGCAACCCTGAAC 7580 ||||||| | ||| |||||| |||| ||| || || | |||||| || Sbjct 16783 AGTCGGCCTGATTCCATGACAGGTAT-TGAC-GGATGACAACCATATGGCAGTACTACGA 16726 Query 7581 AGCGACGTGAAGGCGTTCATCGTTCAGGCGCTGGCCTGTTTCGATACGCCATCCCAGGTT 7640 ||||| || || || |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 16725 AGCGAGGTCAAAGCCTTCATCGTTCAGGCTCTGGCCTGCTTCGATACGCCATCCCAGGTG 16666 Query 7641 GCGGAATCGGTCAAGAAGGAATTCGGCATCGAGGTCAGTCGGCAGCAGATCGAGTCGCAC 7700 | | | ||||||||| |||||||| || ||| ||| || ||||| || ||||| Sbjct 16665 GTAGCAGCGGTCAAGACAGAATTCGGGATTGAGATCACCCGCCAGCAATGTGAAACGCAC 16606 Query 7701 GACCCGAACAAGGTGTGCAGCA-AGGGCCTTGCCGCGAAGTGGCGGATCCTCTTCGAGGA 7759 ||||||| ||| || ||| | || || | | || ||| | ||| ||| | | Sbjct 16605 GACCCGA-CAAAGTTTGCCGGGCAGAAGCTCGGCAAGACCTGGGTGGACCTGTTCCACGC 16547 Query 7760 CACCCGCAAGCGCTTCCGCGAGGAGATCGCCGACATCCCGATCGCCAACCGCGCCTACCG 7819 | |||||||| ||||| || |||| |||| ||||| || ||||| || || ||||| Sbjct 16546 TGCTCGCAAGCGATTCCGTGAAGAGACAACCGATATCCCCATTGCCAATCGTGCGTACCG 16487 Query 7820 ACTGAG-GGCATTGGGTCGGATGGCTGAGCGCGCCGAGGGCATGCGAAACATGGCCCTGG 7878 ||| | ||| ||||| ||| |||| ||| |||||| |||||| ||| |||| ||| Sbjct 16486 ACTTCGCGGCCTTGGG-CGGCTGGCCGAGAAGGCCGAGAACATGCGCAACCTGGCGCTGA 16428 Query 7879 CTGCCCAGCTTTACGAGCAGGCCGCCAAGGAGTCGGGTG 7917 ||||||||||||||||||| || ||||| ||| |||||| Sbjct 16427 CTGCCCAGCTTTACGAGCAAGCAGCCAAAGAGACGGGTG 16389 Score = 203 bits (224), Expect = 1e-47 Identities = 324/465 (70%), Gaps = 0/465 (0%) Strand=Plus/Minus Query 47505 AGCCATAGTGCGCTTACGCCACAAGCGGCAGCCAACTGAGCAATATATGCCGACCCCTGC 47564 |||||| ||||| || ||||| ||| | || | || | | | ||| | | | | Sbjct 25369 AGCCATTTAGCGCTCACCCCACATGCGTCGGCGATCTTCACGACGTGTGCGGTGGCTTTC 25310 Query 47565 GACTTCCCCTGCTCAAGGTTGGAAATTGAGGTTTGGTCCAGGCCGACTCGTTGAGCTAAT 47624 || || || ||||||||| ||||| || || || | ||| || || ||| Sbjct 25309 GATTTTCCACGCTCAAGGTCAGAAATCGACGTCTGCGTGATACCGGCTTTAGCGGCCAAT 25250 Query 47625 TGAGCCTGGGTGAGTTTGGCGTGCTTGCGCGCGGCCTTGATGCGGTCTTTGAGTTCCATC 47684 | |||| |||| ||||||||| |||||| ||||| | || ||||||| ||||||| Sbjct 25249 TCGCCCTGATTGAGCTTGGCGTGCCGGCGCGCTGCCTTTAAACGATCTTTGAATTCCATC 25190 Query 47685 CGAAAAGTATCAGGGGCGTTCCCATATCCTTGCAAATGAGTATTCCCCTGGGATACCTTA 47744 || ||||| | ||| | |||||||||||||||||| |||||||| | || || Sbjct 25189 CGGCGAGTATTACGGGTGCTCCCATATCCTTGCAAATCGGTATTCCCATAACTTAATATA 25130 Query 47745 TGAGTATTCCCATAAGGAGGGATGCTATGACCACCATCTACAAAGAGCTCGTCGCCCATT 47804 || |||||||| || |||||| |||| ||| || || || || ||||| ||| | Sbjct 25129 TGGGTATTCCCGTATGGAGGGGCAGCATGAACACTATTTATAAGGACCTCGTTGCCTTCT 25070 Query 47805 TTGGGACTCAAGACGAGACCGCCGCGAAGCTCGGCGTTGACCAAAGCACTGTGTCTGGAT 47864 | || ||||| || | || |||| |||||| ||||| |||||||| || || || | Sbjct 25069 TCGGCACTCAGGAGGTCACGGCCGAAAAGCTCAAGGTTGATCAAAGCACCGTTTCCGGTT 25010 Query 47865 GGGTCCGGGGAAAGCACGGGATGTCTCCTGTTGTTGCGAAGCGGGCTCAGGTTCTGACCG 47924 |||| || | |||||||| |||||||| || ||||| ||||| || ||| |||||| Sbjct 25009 GGGTTCGCGAGAAGCACGGCATGTCTCCAGTGGTTGCCAAGCGAGCGGAGGCGTTGACCG 24950 Query 47925 ACGGGAAATTCAAGAAAGAGGACCTGTGTCCGGCTTTCCCGTGGG 47969 || ||||| ||||| ||| |||||| | || || |||| Sbjct 24949 GAGGTGCTTTCAAAAAAGAATCCCTTTGTCCGTCGTTTCCCTGGG 24905 Score = 111 bits (122), Expect = 5e-20 Identities = 284/433 (66%), Gaps = 29/433 (7%) Strand=Plus/Minus Query 4555 GGCGCGGAAGGCTATCGCCGACCGAGAGCGGCGGGAGATCAAGGTTCGGAAGGAGAGGCT 4614 |||||| ||||| | ||||| || || ||| |||||||| || ||||||| ||| Sbjct 20622 GGCGCGCAAGGCCCTGGCCGATATCGAACGCAAGGACATCAAGGTCCGCAAGGAGAAGCT 20563 Query 4615 GAAGAGTAAGGCGGATCACCTGCGCGAGGCTCAGCAGGCATTCAACGAATTCATTCGCCT 4674 |||||| | |||||||||||| || || || ||| || | ||||||| | | ||||| Sbjct 20562 GAAGAGCAGGGCGGATCACCTCCGAGAAGCCCAGGTAGCGGTGAACGAATACGTGCGCCT 20503 Query 4675 GCGCGACGCCGACCAGCCGTGCATCAGTTGTGGC----CGCC-----ACCACG-----AT 4720 ||| || || ||| ||| |||||||| || | | |||| || ||| || Sbjct 20502 GCGTGATGCGCACCTGCCCTGCATCAGCTGCGACTCCACGCCCAACGACAACGACCTCAT 20443 Query 4721 G---GGCAG----TNNNNNNNNNNNNNNNNNNGCACGGTTGCCGCCAGCCCAGAGCTTCG 4773 | ||||| | | | || | |||| ||||||| || || Sbjct 20442 GACTGGCAGCCGCTGGGATGCCGGGCATTACCGATCCGTGGGCGCCTGCCCAGAACTGCG 20383 Query 4774 CTTCGAGCCGCTCAACGTCCACAAGCAGTGCGCCCCATGCAA---CAACCATAAGTCAGG 4830 |||||||||||| ||| |||| ||| |||| ||||| ||||| | || || Sbjct 20382 CTTCGAGCCGCTGAACATCCATCGGCAATGCGTGAAGTGCAATCGCAACCTT---TCCGG 20326 Query 4831 CGACATCGTGAACTACCGGATCAACCTGGTGCGCAAGATCGGCGCCGAGAACGTGGAGTG 4890 | || ||| | ||||| ||| |||||||| || || |||||||| |||| || Sbjct 20325 CAACGCGGTGGAGTACCGAATCCGCCTGGTGCTGCGCATTGGTGCCGAGAAGGTGGCCTG 20266 Query 4891 GCTGGAAGGCCCTCATGAGCCCCTGAAACT-GACCATCGAAGAAATCAAAGCGCTGAAGG 4949 ||||||| ||| || || || || | ||| | ||||| |||||||| | || | Sbjct 20265 GCTGGAAAGCCTGCA-CCCACCGTGCAAGTACACCGTGGAAGAGATCAAAGCCATCAAAG 20207 Query 4950 CCCAGTTCCGGGC 4962 || | | |||||| Sbjct 20206 CCGAATACCGGGC 20194 >seq21847 Length=54027 Score = 176 bits (194), Expect = 1e-39 Identities = 403/596 (68%), Gaps = 27/596 (5%) Strand=Plus/Minus Query 33748 CTCAAGGGGCGCCATCGGGTTCTTCTTGATCAGACCGTCCTT---CACAGCGGAATCTAG 33804 ||| ||| |||| |||||||||| ||||| || ||||| ||| ||||| | ||| Sbjct 3890 CTCCAGGATCGCCGCCGGGTTCTTCGGGATCA-AC--TCCTTGGACACGGCGGAGTTTAG 3834 Query 33805 GATCGTCGACAGCTTGAACATCGCGTTTCGCTTCACGCCTGGCGACGTCCACTCGATGCT 33864 || ||||||||||| | |||||||| |||||||| ||||||||| |||| || || Sbjct 3833 TATTGTCGACAGCTTCGAGATCGCGTTGCGCTTCACCCCTGGCGACTTCCATTCCCTGGA 3774 Query 33865 GCTGATGATTCGGCGCAAGAGGGTAGGGGTGATCTGATCAAGCCGGGCTACTGCTAGATG 33924 || | |||||| | || || | ||||||| | || | ||| | | || || Sbjct 3773 AGCCATAACTCGGCGGAGCAGCGTGGTGGTGATCAGGTCGATCCGCACCAGGGCCAGCCC 3714 Query 33925 TGGCATCCAGTATTGGTTGAGGATGCTCTTGTAGTT--CTTGCGTGTCCCAAGCACGATC 33982 ||||||||||| ||| || | ||||||||| | | |||| || ||| | | Sbjct 3713 GGGCATCCAGTACCTGTTTAGCGCTCCCTTGTAGTTCCCCTTCGTG--CCGGCCACTACC 3656 Query 33983 TCTCGGCTGTCTAGCCAGAGTTGAGCATGCTCACCGAACAGGGGGATTTGGCTGCTGACC 34042 || ||||| || |||||||| ||||| | ||| ||||| | ||| | | || | | Sbjct 3655 TCACGGCTATCCAGCCAGAGCTGAGCGTACTCGCCGAA---GTTGATCTTCCCGCCG-GC 3600 Query 34043 GATTCCGCAATCGC-AGACCCGGGGAAGAACTCTGCATACCGGGCTTCATCCATGATGCC 34101 || || | || || | |||||| | ||| || ||| | | || || | | || Sbjct 3599 GA---CG---TTGCTGGAACTGGGGAATAGCTCGGCGTACTTGTCGTCGTCGAGCAGCCC 3546 Query 34102 CAGCTTGATTGCCTGGACTACCTGATCTCTAAGACCGGATGCAGTCTTAATCCCTTTTTG 34161 ||||||||| | |||||| || || || || | || || ||||| || Sbjct 3545 CAGCTTGATCAGCCCCTTTACCTGGTCAACAACCTGTGAGGCTGATTTGATTCCTTTCTG 3486 Query 34162 CGTCGCGGGATAGGGGAGTGTTTCGCACTTCCTTGTTCCGTTCCACATGAAGCGGATACG 34221 ||||||||||||||||| ||||| | || | ||||||||||| || ||||| || Sbjct 3485 TGTCGCGGGATAGGGGAGCGTTTCACTGCGCCGGCTGCCGTTCCACATAAATCGGATGCG 3426 Query 34222 GATAGAGTTGCCGATGACTTCCACCCCGGTGGGCATACCCAAAGGCTTTCGAGCCATTCG 34281 ||| || | | || |||| || | ||||| ||||| | ||||||||||||||| Sbjct 3425 GATCGATCCGTGGTGGAGGTCCATTCCTGCGGGCAGACCCACTGACTTTCGAGCCATTCG 3366 Query 34282 TCGTATCTCCGTCGACTGTAGATTATTTTCCCGTTGAC---CTTGTTCCAGACGCC 34334 | ||||||| |||||||| | ||| | || | ||| ||||||||||| Sbjct 3365 TAATATCTCCTGATGCTGTAGATGA---TCCTGCTGCCATGCTTATTCCAGACGCC 3313 Score = 102 bits (112), Expect = 3e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 33114 TCTGTAGCTTCTCCAACTCGCTCCAATCCGAGGCGGAGTTCAGCCACTTGGCATAGGTCG 33173 |||| ||||| |||| ||| |||| |||||| ||||| | ||| ||||| |||| Sbjct 4521 TCTGGAGCTTTTCCATTTCGGTCCAGTCCGAGCTTGAGTTGATCCAGCGCGCATAAGTCG 4462 Query 33174 ATAGCAGCATCTGCACGCTGTGGCCTAGCTGTCCAGCGATAAACGCAGGGTTCATGCCAG 33233 | |||||||||||||| || ||||| ||||| | ||| || || ||||||||||||| Sbjct 4461 AGAGCAGCATCTGCACACTATGGCCGAGCTGCTGGGAGATGAATGCGGGGTTCATGCCAG 4402 Query 33234 CCATCAGGCACATGGTCGCGTATGTGTGGCG 33264 ||| | | | | ||||| || ||||| || Sbjct 4401 ACATAATGTATGTTGTCGCATAGGTGTGACG 4371 >seq8565 Length=20341 Score = 140 bits (154), Expect = 1e-28 Identities = 206/289 (71%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 31674 GGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTAC 31733 ||||| |||| |||||| || || || ||| | ||| ||||||||||||| |||||| Sbjct 20105 GGCGATGGCTTCAAGTACCGTGGCCGTGGCCTGATCCAGGTCACCGGCCGGGCCAACTAC 20046 Query 31734 CGCGCCGC-CGGCGACGGGCTGGGCCAGCCGCTGGAGCAGGAACCCGAGCTTCTCGAGCA 31792 ||| || |||||| | ||||||| | ||| | | |||||||| |||||||| Sbjct 20045 -GCGGCGTGCGGCGAGGCCCTGGGCCTGGACCTGATCAATCACCCCGAGCTGCTCGAGCA 19987 Query 31793 ACCGGAGTGGGCGGCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAACGACCT 31852 ||| ||| || || || ||||||||||||| ||| || | || ||||| ||| Sbjct 19986 GCCGCAGTACGCCGCAATGTCGGCGGCCTGGTTTTGGTCCTCCCGTGGATTGAATACCCT 19927 Query 31853 GGCCGACCGCGGCGAGTTCGCCGCCATCACTCGGCGCATCAACGGCGGCACGAACGGCCA 31912 ||| |||| |||| ||| ||||| |||||||||||| ||||| ||||| | Sbjct 19926 GGCTGACCAGAGCGATTTCCTGAAGATCACCAAGCGCATCAACGGTGGCACCAACGGACT 19867 Query 31913 GGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAGAGGGTGCTGTCGTGA 31961 ||| || |||| ||| |||| || |||| || ||||||| | ||| Sbjct 19866 GGCCGACCGCCAGGCTCTGTACGACAAGGCGCTGATGGTGCTGGCATGA 19818 Score = 87.8 bits (96), Expect = 6e-13 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 31342 CTGAGCAGCAGTTGCTGCATATCCTCCCGAACGCCGGCTCGAGGGCCGGCGTTTTTGTTG 31401 ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| Sbjct 20341 CTGAGCAGCAGCTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCCGGCGTTTTTGTTC 20282 Query 31402 GTGCGCTGAACCGCGGGATGACGCGCTTCGGTATCACGTCGCCTG--TGCGCGCGGCGAC 31459 || |||||| | ||| | | ||| || |||| | | |||||| ||| | Sbjct 20281 CTGTGCTGAATACGGCCATGGCCAAGTACGGAAT--CGTCACTCGGCTGCGCGTGGCCGC 20224 Query 31460 GTTCCTCGCCCAGGTCGGCCACGAAAGCGGCCAGTT 31495 ||| |||||||| |||| ||||| ||| ||||| Sbjct 20223 CTTCATCGCCCAGATCGGGCACGAGTCCGGGCAGTT 20188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156710620482470