Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq8565 87.8 5e-13 seq21847 84.2 6e-12 >seq8565 Length=20341 Score = 87.8 bits (96), Expect = 5e-13 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 41456 GGCGATGGGTATCGA-TACCGGGGCCGCGGCCTGATCATGATTACGGGCCACGACAACTA 41514 |||||||| | || | ||||| ||||| ||||||||| | | || |||| | |||||| Sbjct 20105 GGCGATGGCT-TCAAGTACCGTGGCCGTGGCCTGATCCAGGTCACCGGCCGGGCCAACTA 20047 Query 41515 CGCCGAAGCCGGACGTGCCCTGGCGCTGCCACTGGTGGCGCAACCGGAGCTGCTGGAGCA 41574 ||| | ||| ||||||| ||| ||| | || || |||||||| ||||| Sbjct 20046 CGCGGCGTGCGGCGAGGCCCTGGGCCTGGACCTGATCAATCACCCCGAGCTGCTCGAGCA 19987 Query 41575 ACGGACCTGGGCAGCAATCGCCGCGGGGTGGTTCTGGCAGTCGCGGGGTTTAAACGACCT 41634 | | | || ||||| | |||| ||||| ||| || || || || || ||| Sbjct 19986 GCCGCAGTACGCCGCAATGTCGGCGGCCTGGTTTTGGTCCTCCCGTGGATTGAATACCCT 19927 Query 41635 GGCTGACCAGGGCCGTTTCGAGAAGATCACCCTCCGCATAAACGG 41679 |||||||||| || |||| |||||||||| ||||| ||||| Sbjct 19926 GGCTGACCAGAGCGATTTCCTGAAGATCACCAAGCGCATCAACGG 19882 >seq21847 Length=54027 Score = 84.2 bits (92), Expect = 6e-12 Identities = 204/301 (68%), Gaps = 11/301 (4%) Strand=Plus/Minus Query 24511 TCGACAGCTTGTCGACAGCGTTACGGCGCACACCAGCGGAACTCCATTCGGTATTGGCGA 24570 |||||||||| || ||||| || ||| || | || ||||||| | || | Sbjct 3828 TCGACAGCTTCGAGATCGCGTTGCGCTTCACCCCTGGCGACTTCCATTCCCTGGAAGCCA 3769 Query 24571 CAACTCGGCGAA-CATCG-GCTGCCGACACCAGATCAATCCTCGCCTCGGCGAGATATGG 24628 ||||||||| | || || | || || ||| || |||| | || ||| || || Sbjct 3768 TAACTCGGCGGAGCAGCGTGGTGGTGAT--CAGGTCGATCCGCACCAGGGCCAGCCCGGG 3711 Query 24629 CATCCAGTAGCGGTTGAGTGTGCCCTTGTAGTTGC--TGCGTGTTGTCTCGACGATTTCC 24686 ||||||||| | ||| || | ||||||||||| | | |||| | | || | || Sbjct 3710 CATCCAGTACCTGTTTAGCGCTCCCTTGTAGTTCCCCTTCGTGCCGGCC--ACTACCTCA 3653 Query 24687 CTGCTGTCGAGCCAGATTTGGGCGTACTCGCCGAAGGTTGGAATCGACGCGCTTTTGACG 24746 | ||| || ||||||| || ||||||||||||||| ||| ||| | ||| |||| Sbjct 3652 CGGCTATCCAGCCAGAGCTGAGCGTACTCGCCGAAG-TTG--ATCTTCCCGCCGGCGACG 3596 Query 24747 TAAGAAGAATCGGGGAAGAGTTCCGCGTACTTCTCTTCGGTCATCACCCCCAGCTTGATC 24806 | ||| |||||| || || |||||||| || ||| | || ||||||||||||| Sbjct 3595 TTGCTGGAACTGGGGAATAGCTCGGCGTACTTGTCGTCGTCGAGCAGCCCCAGCTTGATC 3536 Query 24807 A 24807 | Sbjct 3535 A 3535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138300041209134