Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq11874 2030 0.0 seq11873 486 1e-132 seq11876 338 4e-88 seq32405 219 3e-52 seq23277 111 1e-19 seq36294 104 2e-17 seq21847 82.4 5e-11 >seq11874 Length=1318 Score = 2030 bits (2250), Expect = 0.0 Identities = 1241/1318 (94%), Gaps = 0/1318 (0%) Strand=Plus/Minus Query 59414 CGGCCACCCGCGCGGAAGCGCTGGCCATCGGAGGATGAGGTCGTGCCGTCGCCCCAGTGG 59473 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1318 CGGCCGCCAGCGCGGAAGCGCTGGCCATCGGAGGATGAGGTGGTGCCGTCGCCCCAGTGG 1259 Query 59474 GCGGCAAAGGCGTGGCGATACTGGTGGTTGACCAGCTCGGCCAAGGCCGCCGAATAGGTT 59533 ||||| ||||| ||||| |||||||||||||||| |||||||| ||| |||||||||||| Sbjct 1258 GCGGCGAAGGCATGGCGGTACTGGTGGTTGACCAACTCGGCCAGGGCTGCCGAATAGGTT 1199 Query 59534 TCGTCGCGGATGTGCCAGGCTTGCAGCCAGGACAGCTTGGCGTAGGTCAGGCCGGGGCTC 59593 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1198 TCGTCGCGGATATGCCAGGCTTGTAGCCAGGACAGCTTGGCGTAGGTCAGGCCGGGGCTC 1139 Query 59594 GACTCGGCCATCTTGGTCAGCCCGAGGTTGATCGCATCACCGAGGATTGCGGACAGCAGC 59653 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1138 GACTCGGCCATCTTGGTCAGCCCGAGGTTGATCGCATCGCCGAGGATCGCGGACAGCAGC 1079 Query 59654 AACGTCCTGTCTTTGGCCTCGGCCCCGTCCTTCAAGTGGGTGAAGTGGCGGCTGAAGCCC 59713 ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| Sbjct 1078 AACGTCCGGTCTTTGGCCTCGGCACCGTCCTTCAGGTGGGTGAAGTGGCGGCTGAATCCC 1019 Query 59714 GTCCAGTCGTCCACGTCCATCAGCAGTTCGGTGATCTTGATGCGCGGCAGTAACTGGCTG 59773 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1018 GTCCAGTCGTCCACGTCCATCAGCAGTTCGGTGATCTTGATGCGCGGCAGCAGCTGGCTG 959 Query 59774 GTTTGGTCGATCAGCGCCTGCGCCCGATCCGGCACCGCCGCATCCAGCGGGGTGATTTTC 59833 || |||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 958 GTCTGGTCGATCAGCGCCTGCGCCCGATCCGGCACCGCCGCATCCAGTGGGGTGATCTTG 899 Query 59834 AGCCCTGACTCGGTGAGGATGGCATCGGGCAGCTCGTTGTCCTTGGCCAGGCGGGTGACG 59893 ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 898 AGCCCGGACTCGGTGAGGATGGCGTCGGGCAGCTCGTTGTCCTTGGCCAGCTGGGTGACG 839 Query 59894 GTGGCCAACTGCTCGTCCAGCAGCTGCAAACGCTCTTCCAGGTACTGGTCGCTGTTCGGG 59953 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 838 GTGGCCAACTGTTCGTCCAGCAGCTGCAAGCGCTCTTCCAGGTACTGGTCGCTGTTCGGG 779 Query 59954 TTGATCGCCAGGGGCAGGGCCTGCTCGCGCTTGAGTGCGGCGAACTTCTCGGCCGGCAGC 60013 |||||||||||||||||||||||| | |||||||| ||||||||||| || || |||||| Sbjct 778 TTGATCGCCAGGGGCAGGGCCTGCGCACGCTTGAGCGCGGCGAACTTATCTGCTGGCAGC 719 Query 60014 AGGTAGTCGTCGAAGTCGCGGAACTGCCGCGAGCCCTTGACCCAGATGTCGCCGGAGCGC 60073 ||||||||||||||||||||||||||||| || || ||||||||||||||||| || ||| Sbjct 718 AGGTAGTCGTCGAAGTCGCGGAACTGCCGAGAACCTTTGACCCAGATGTCGCCAGAACGC 659 Query 60074 AGGGCGTTCTTCAGCTCGGACAGGGCGCAGATTTCGTAGAATTTCCGGTCGAGGCCTTCC 60133 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 658 AGGGCGTTCTTCAGCTCGGACAGGGCGCAGATTTCGTAGAAGCGCCGGTCGAGGCCTTCC 599 Query 60134 GGGGTGATCACCAGCGGCTTCCAGCGCGGCTTGATGAAGGCCGTGGGTGCATCGGCCGGC 60193 |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 598 GGGGTGATCACCAGTGGCTTCCAGCGCGGCTTGATGAAGGCGGTGGGGGCATCGGCCGGG 539 Query 60194 ACCTTGCGCAGGTTGTCGGCGTTCATCTCACGCAGGGTCTGCACGGCTGCCAGCACGCCT 60253 ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct 538 ACCTTGCGCAGGTTGTCGGCGTTCATCTCGCGCAGCGTCTGCACGGCTGCTAGCACGCCC 479 Query 60254 TGCGCGGCCGGCGCGGCGCGCAGTTCCAGCACCTCCAGCAAGGCCGGCGTGTAACGGCGC 60313 ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||| |||||| Sbjct 478 TGCGCGGCCGGGGCGGCGCGCAGCTCCAGTACCTCCAGCAGGGCCGGTGTGTAGCGGCGC 419 Query 60314 AGGGTGGCGAAGTTCTCGCCGACCAGGTGCAGGTGGTCGAAGCCTTCCGGCCGGGCCAGC 60373 ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 418 AGGGTGGCGAAGTTCTCGCCGACCAGGTGCAGGTGGTCGAAACCCTCGGGCCGGGCCAGC 359 Query 60374 AGCTCGGCCTCGCTGACGCTCTCGGTGAACTCGTCCCAGGGAATCACCGCCTCGATGGCG 60433 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 358 AGCTCGGCCTCGCTGACGCTCTCGGTGAACTCGTCCCAGGGAATCACCTCCTCGATGGCA 299 Query 60434 GCATAGGGGTCGCTGCCGCTTTCCTTCGCTTCCAGCAGCGCCTGGCCGATCCTGGAGTAC 60493 |||||||| ||||||||||||||||| || |||||||| |||||||||||| |||||||| Sbjct 298 GCATAGGGATCGCTGCCGCTTTCCTTGGCCTCCAGCAGAGCCTGGCCGATCTTGGAGTAC 239 Query 60494 AGGCGCACCTTGTCGTTGATCGCCTTGCCCTGCTTCTGGAACTGCTGCTGATGCTTGTGC 60553 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 238 AGGCGCACCTTGTCGTTGATCGCCTTTCCCTGCTTCTGGAACTGCTGCTGATGCTTGTGC 179 Query 60554 TTCGCGCCGCTGAACAGCTTGACCAGGATGCGGTCATGCAGATCGACCAGCTCATCGATC 60613 ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 178 TTCGCGCTGCTGAACAGCTTGACCAGGATGCGGTCGTGCAGATCCACCAGCTCATCAATC 119 Query 60614 ACGGTCGCGGTGCTCTCCAGCACCACGGCGGCCAGGGTCGCGTAGCGGCGCTGCGGCTCG 60673 ||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 118 ACGGTTGCAGTGCTCTCCAGTACCACGGCGGCCAGGGTCGCGTAGCGCCGCTGCGGCTCG 59 Query 60674 AACTTACCGAGGTCTTTGGGCGTCATCTGCCCACCCTCGCGGGCCAGCTTGAGCAGGC 60731 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 AACTTGCCGAGGTCTTTGGGCGTCATCTGCCCACCCTCGCGGGCCAGCTTGAGCAGGC 1 >seq11873 Length=12404 Score = 486 bits (538), Expect = 1e-132 Identities = 283/292 (97%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 59570 TTGGCGTAGGTCAGGCCGGGGCTCGACTCGGCCATCTTGGTCAGCCCGAGGTTGATCGCA 59629 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 12404 TTGGCGTAGGTCAGGCCGGGGCTCGACTCGGCCATCTTGGTCAGTCCGAGGTTGATTGCA 12345 Query 59630 TCACCGAGGATTGCGGACAGCAGCAACGTCCTGTCTTTGGCCTCGGCCCCGTCCTTCAAG 59689 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 12344 TCACCGAGGATCGCGGACAGCAGCAACGTCCGGTCTTTGGCCTCGGCCCCGTCCTTCAAG 12285 Query 59690 TGGGTGAAGTGGCGGCTGAAGCCCGTCCAGTCGTCCACGTCCATCAGCAGTTCGGTGATC 59749 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 12284 TGGGTGAAGTGGCGGCTGAAGCCCGTCCAATCGTCCACGTCCATCAGCAGTTCGGTGATC 12225 Query 59750 TTGATGCGCGGCAGTAACTGGCTGGTTTGGTCGATCAGCGCCTGCGCCCGATCCGGCACC 59809 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 12224 TTGATGCGCGGCAGTAACTGACTGGTCTGGTCGATCAGCGCCTGCGCCCGATCCGGCACC 12165 Query 59810 GCCGCATCCAGCGGGGTGATTTTCAGCCCTGACTCGGTGAGGATGGCATCGG 59861 |||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 12164 GCCGCATCCAGCGGGGTGATTTTCAGGCCGGACTCGGTGAGGATGGCATCGG 12113 >seq11876 Length=50584 Score = 338 bits (374), Expect = 4e-88 Identities = 219/240 (91%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 58477 ATAGGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGGTTTTCCGGGCATCCGTAA 58536 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 241 ATAGGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGGTTTTCCGGGCATTCGCAA 182 Query 58537 GGGCCGAAACTTCCCGTCTTCCAGTCTGCGGCTCTGCCGCCAGACGTAATCGCCGGTTAG 58596 || || ||||||||||| ||||| |||||||||||||||||||||||||||||||| || Sbjct 181 CGGTCGGAACTTCCCGTCCTCCAGCCTGCGGCTCTGCCGCCAGACGTAATCGCCGGTCAG 122 Query 58597 GTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAGCAGCTCGCCGTCCACCGGCTT 58656 ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 121 GTTAATGTGCTCCCAGCCCAGCGGCGACAGGTATTGCAGCAGTTCGCCGTCCACCGGCTT 62 Query 58657 GCCGGCCTCGACCAACCCCTGGGTGGCGCGTTCCAGGTACACCGTGTTCCACAGCACGAT 58716 ||| | ||| || | | ||||||||||| || |||||||||||||||||||||||||| Sbjct 61 GCCCGTGTCGCACATCGCATGGGTGGCGCGCTCTAGGTACACCGTGTTCCACAGCACGAT 2 >seq32405 Length=7639 Score = 219 bits (242), Expect = 3e-52 Identities = 492/734 (67%), Gaps = 10/734 (1%) Strand=Plus/Plus Query 96703 GTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCCATT 96762 ||| || || || | ||||| ||| | || |||| | | ||||| ||||| || || Sbjct 2718 GTTCTCGAAGCGGGTGTATTTACCGATGAAGGCCAGGCGCGTGGTGCCGATTGGCCCGTT 2777 Query 96763 TCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATAAAC 96822 || || || |||||||| | || || ||||| || ||| | ||||||||||| || Sbjct 2778 ACGCTGTTTACCGATAATGATTTCAGCGATGCCTTTATGCTCGGTCTCCGGGTGATACAC 2837 Query 96823 TTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCACG 96882 ||||| || || | |||||||||| ||| || |||||||| || ||||| ||||| || Sbjct 2838 CTCGTCCCGGTATACGAACATGATCACGTCAGCATCCTGCTCGATCGCTCCGGATTCCCG 2897 Query 96883 TAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTGTGA 96942 || || || || | ||| ||||||| || |||||| ||||| ||||| || || || || Sbjct 2898 CAAGTCGGAGTTGATCGGGCGTTTGTTCGGACGCTGCTCAAGAGATCGGTTGAGCTGCGA 2957 Query 96943 CAATGCCACCACC-GGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATCT 97001 || || |||||| || | ||| |||||||| |||| || |||| ||||| ||||||| Sbjct 2958 CAGGGCAACCACCGGGCAGTTG-AATTCCTTGGCCAGGGCTTTCAACGAGCGGGAAATCT 3016 Query 97002 CGGCAATTTCCAGCGTTCGGTTATC----TTGCAGCTCCGGGACGCGCATAAGTTGCAGG 97057 ||| ||| || || ||| | || || ||| |||||| |||| | |||||| Sbjct 3017 CGGAAATCTCGTTGGTCCGGCTGTCACCGCTGGAGC-CCGGGATCTGCATCAACTGCAGG 3075 Query 97058 TAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAA 97117 ||||||||||| |||| | | | | || | || | || || | || | Sbjct 3076 TAGTCGATCATGATCAGGGCAATATCGCCGTGCTCACGCACCAGGCGTCGGGTACGCGCG 3135 Query 97118 CGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCCAAC 97177 || | || | ||| | | | | | |||||| ||||| | || | | || | | Sbjct 3136 CGCATTTCCGACGGGCTGATGCCCGCGGTGTCATCGATAAACAGCTTGCGATCGTTGAGC 3195 Query 97178 AGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGA 97237 || | || || | | ||||| ||| || ||||| | || | || | || Sbjct 3196 AGGTTGACC---GCCGAGGTCAGCCGCGGCCAGTCGTCGTCTTCCAGGCGGCCGGCACGC 3252 Query 97238 ATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTGGCTC 97297 | ||||| || | ||| | || || | || ||||| |||||| | || Sbjct 3253 ACCTTGGTCTGGTCGATGCGGCCCAGGGACGACAACATACGCATGATCAGCGATTCGCCT 3312 Query 97298 GGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTTCGACG 97357 |||||||| ||| |||||| ||||| ||| ||| | || | |||| ||||| || Sbjct 3313 GGCATCTCCAGGGAGTAAACCAGTACGGCCTTGTCGCTGCGCAACACGGCGTTTTCCACC 3372 Query 97358 AGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGAGATCG 97417 || ||||| || || ||||| || ||||| || || ||| ||||||| ||||| | ||| Sbjct 3373 AGGTTCATGGCGAAGGTGGTTTTACCCATGGACGGACGGCCGGCGACGATGATCAAGTCG 3432 Query 97418 GACGACTGAAGCCC 97431 | | ||| || || Sbjct 3433 GCTGGCTGCAGGCC 3446 >seq23277 Length=14139 Score = 111 bits (122), Expect = 1e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 62401 GATGCCAATATTCTTTCGACTACCTCCCCTCAAAGCCATATCACGTACGTTAATCCTGAC 62460 || |||||||| || ||||| ||| || ||| || || |||| || | ||| Sbjct 13783 GACGCCAATATCCTCTCGACCACCGACCTGACCAGCGCAATTACCTACGCCAACCAGGAC 13842 Query 62461 TTCATTAAAATCAGTGGTTTCACTGAGGAAGAACTATTAGGCCAGCCTCACAACATCGTA 62520 ||||| | ||||| || | ||| || || | | ||| ||| |||||| | | Sbjct 13843 TTCATCGATATCAGCGGCTACACCCGCGAGGAGTTGCTGGGCACGCCGCACAACCTGCTG 13902 Query 62521 AGACACCCAGATATGCCGCCTGCTGCATTTGAGCATATGTGGAGTACATTAAAATCTGGC 62580 | ||||| || |||||| | || || |||| ||| |||||| ||| ||| || Sbjct 13903 CGTCACCCGGACATGCCGGCCGCGGCGTTTGCGCACATGTGGCAGGTATTGAAAAGCGGT 13962 Query 62581 CGCTCATGGATGGGGCTAGTAAAAAATCGCTGTAAAAATGGCGACCACTATTGGGTAAGT 62640 ||||| |||||||| | || ||||||||||| || || ||||| ||||||||||| ||| Sbjct 13963 CGCTCGTGGATGGGTATGGTGAAAAATCGCTGCAAGAACGGCGATCACTATTGGGTCAGT 14022 Query 62641 GCTTATGTAACGCC 62654 || |||| ||||| Sbjct 14023 GCCTATGCCACGCC 14036 >seq36294 Length=49020 Score = 104 bits (114), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 44707 CGCCGATCATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTA 44766 |||| | || |||||||||||| | | ||| | ||||| || |||||||| | | Sbjct 39213 CGCCCAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCTTGA 39154 Query 44767 CACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAAC 44826 ||| | | || ||||| ||||||| || || ||||||||||||||||| |||| Sbjct 39153 TGCCGTCTTTTTC---CCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAAC 39097 Query 44827 CTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCC 44886 |||| || | || |||| || || || |||| || ||||||| || |||| Sbjct 39096 CTTTGCGCAGGTATTCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCC 39037 Query 44887 ATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCG 44924 |||| |||| ||| || ||||| |||||||||||| Sbjct 39036 ATTCGGTTTTCTCGACCTTCTGGCCGGTTTGCTTGTCG 38999 >seq21847 Length=54027 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 84434 GCTGATATCGTTCAACCGCTCAACGCGCACGTTGGTAATTTCCAGAAGAATGCGCGATGC 84493 ||||||||| | || |||||| ||||| || | ||| || ||||| || ||||| |||| Sbjct 1264 GCTGATATCCTGCAGCCGCTCGACGCGGACATCGGTGATCTCCAGCAGGATGCGGCATGC 1205 Query 84494 CCAGCGCGGCATGTGAATTGATGGCGTCCA 84523 |||||||||||| || || || ||| |||| Sbjct 1204 CCAGCGCGGCATATGGATCGACGGCTTCCA 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330740253913558