Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2393 143 6e-29 seq21875 131 4e-25 seq34640 114 3e-20 >seq2393 Length=4323 Score = 143 bits (158), Expect = 6e-29 Identities = 177/240 (74%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || ||||| |||||||| || ||||||||||| || || | ||| || ||||| Sbjct 1943 GAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATC 2002 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||||| || || || ||||| || | |||||||||| || ||| || ||||| || Sbjct 2003 TTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTC 2062 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || ||| | || | | | || ||| || |||||||||||||| Sbjct 2063 CTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGAGTAATAGT 2122 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTTACTCTACCCATCTTTAAC 152131 ||||| ||||||||||| ||||||| |||||| || || | | ||||| ||||||| Sbjct 2123 CTTGCCTGTGAGAGTCTTAACGAAGATCTGCATCTTTCC--TCTTTTACCC--CTTTAAC 2178 Score = 127 bits (140), Expect = 5e-24 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || ||||| |||||||| || ||||||||||| || || | ||| || ||||| Sbjct 911 GAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATC 970 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||||| || || || ||||| || | |||||||||| || ||| || ||||| || Sbjct 971 TTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTC 1030 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || ||| | || | | | || ||| || ||||| || ||||| Sbjct 1031 CTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGGGTGATAGT 1090 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTTACTCT 152118 ||||| || ||||| ||||| |||| ||||||| | |||| |||| Sbjct 1091 CTTGCCAGTAAGAGTTTTCACAAAGATCTGCATTCT-CCCTCCCTCT 1136 >seq21875 Length=4161 Score = 131 bits (144), Expect = 4e-25 Identities = 167/227 (74%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | ||| || || || || ||||| || ||||||||||| ||||| | ||||| Sbjct 225 GAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCT 284 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||||||||| || ||||||||||| | || ||| ||| Sbjct 285 GCCGTCCTCGAGCTGCTTT--CCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCT 342 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCA 152060 ||||| || || || || || ||| |||| | |||| ||| ||| || ||| Sbjct 343 TCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGA---CTCCACCTCA 399 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || || ||||||||||| | |||||| || Sbjct 400 AGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 >seq34640 Length=3269 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || ||||||||||| || || | || || || || Sbjct 1130 GAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCGTC 1189 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || |||||||||||||| | || ||||||||| | || ||| || ||||| || Sbjct 1190 CTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 1249 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| |||| | | |||| ||| || || || || || || Sbjct 1250 CTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGT 1309 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||| || ||||| ||||||| |||||| || Sbjct 1310 CTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTT 1345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153238144654123