Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq34640 190 4e-43 seq29849 161 2e-34 seq2393 141 2e-28 seq21875 138 2e-27 seq24896 107 4e-18 seq26061 89.7 1e-12 seq36249 84.2 5e-11 >seq34640 Length=3269 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| ||| Sbjct 1116 CCACCACGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 1175 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | ||| ||||| || || |||||||| |||||||| || || |||||| ||| Sbjct 1176 AGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGG 1235 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || || | ||||| ||||| | ||||| Sbjct 1236 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACC 1295 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||||| ||||||||||| |||||||| || Sbjct 1296 TCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTT 1345 >seq29849 Length=3363 Score = 161 bits (178), Expect = 2e-34 Identities = 152/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| ||||||||||| ||||| ||||| || ||||| ||||| || || || ||| Sbjct 1082 TCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAG 1141 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || |||||| ||| || || |||||||| |||||||| | || ||| | Sbjct 1142 ATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTC 1201 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| | ||||||||||||||||||||||| || |||| ||||| || Sbjct 1202 TCAATCGTGTCGTTGGACTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACA 1261 Query 283089 AATATCTGCATTTT 283102 || || |||||||| Sbjct 1262 AAAATTTGCATTTT 1275 >seq2393 Length=4323 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||||||| || ||||| || | || || || ||||||||||||||||| Sbjct 1928 ACCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 1987 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||| |||| || || || |||||||| | ||||| ||||| ||| Sbjct 1988 CAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 2047 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | ||||| || || | || || Sbjct 2048 GATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCAC 2107 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| || ||||| || || | |||||||||||| |||||||| || Sbjct 2108 CTCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAACGAAGATCTGCATCTT 2158 Score = 131 bits (144), Expect = 4e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||||||| || ||||| || | || || || ||||||||||||||||| Sbjct 896 ACCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 955 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||| |||| || || || |||||||| | ||||| ||||| ||| Sbjct 956 CAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 1015 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | ||||| || || | || || Sbjct 1016 GATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCAC 1075 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| ||||| || || | ||| || || || ||||||||| || Sbjct 1076 CTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATTCTC 1127 >seq21875 Length=4161 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || | | ||||| || | ||| || || |||||||||||||| || Sbjct 217 CCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 276 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | ||| ||||| || || || ||||| ||||||| | || ||||| ||| Sbjct 277 AGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGG 336 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| | || || | ||||| ||||| | || || Sbjct 337 ATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACC 396 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| || |||| ||||| ||||| |||||||| ||| Sbjct 397 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTTC 447 >seq24896 Length=5287 Score = 107 bits (118), Expect = 4e-18 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 301324 ATGTTCATCACCGGCGGCGTTTCAAGTTCATTGGGGAAAGGCCTCGCTGCTGCGAGT-AT 301382 || ||| |||| ||||| ||| |||||||||||||||| | || || || | || Sbjct 2204 ATATTCGTCACGGGCGGTGTTGTTTCTTCATTGGGGAAAGGCATTGC--CTCCGCTTCAT 2147 Query 301383 CGCCAGTT-TACTAGAGAGGCGATGCTTAAAGATAGCGATGCTTAAAATGGACCCCTATA 301441 | | | | || ||| ||| | | ||| | | ||||| || ||||||| || | Sbjct 2146 TGGCGGCCATCCTGGAGGCGCGGGGACTTAAGGTCACCATGCTCAAGCTGGACCCGTACA 2087 Query 301442 TCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATG 301501 ||||||| || ||||| || ||||||||| || || || ||||||||||| || | | Sbjct 2086 TCAACGTTGACCCGGGCACCATGAGCCCGTTCCAGCACGGTGAAGTGTTCGTCACCCACG 2027 Query 301502 ATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCA 301546 | || || || ||||| ||||| ||||| |||||||| || |||| Sbjct 2026 ACGGCGCCGAGACCGACCTGGACCTGGGCCACTACGAGCGGTTCA 1982 >seq26061 Length=1673 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||| ||||| || || |||| | | || ||||| ||||| || || | Sbjct 1095 CTGATCGGGATGAACAGCGACCTGATGGCGAAGTACATCGAGTTCGTGTGCGACCGACTG 1154 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||||| | || || |||||||| || ||| | |||||| |||| || |||||| Sbjct 1155 TTCGTGACTCTCGGCTACGAGAAGTACTACAACACGGCGAACCCGTTCGACTTCATGGAG 1214 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 ||||| || || || || || || ||||||||||||||||| || Sbjct 1215 CTCATCTCCCTGCAAGGCAAGACAAACTTCTTCGAAAAGCGCGT 1258 >seq36249 Length=3418 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 ||| ||||| |||||||| |||||||||| || ||| | || || ||||| | || Sbjct 3416 CGGGATACCTTCCTTGTCCTGGATCTTTGACTTCACGTTCTCAATCGTGTCATTGGACTC 3357 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||||||||| || |||| || || || || |||||||| Sbjct 3356 GACCTCGAGTGTGATCGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 3306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046210618620102