Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq34640 145 5e-30 seq21875 141 7e-29 seq2393 111 1e-19 >seq34640 Length=3269 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | | ||||||||| ||||| |||||| ||||||||||| || || Sbjct 1115 TCCACCACGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1174 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | |||| ||||||||||||||||| |||||||| |||||||| || | || Sbjct 1175 AAGCGTCCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGG 1234 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| ||||| | | |||||||| || || || Sbjct 1235 GATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGAC 1294 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | ||| || ||||| ||||| |||||||| |||||||| ||||| Sbjct 1295 CTCGAGCGTGATTGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCAT 1342 >seq21875 Length=4161 Score = 141 bits (156), Expect = 7e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||| |||||||| || ||| |||||| ||||||||||| ||||| || | Sbjct 226 AGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCTG 285 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 |||| || |||||||| ||||| ||||||| | |||||| || | || | |||||| Sbjct 286 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCTTCC 345 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||||| | | || |||||| || |||||||| | || Sbjct 346 TTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACCTCAAGGGTG 405 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || |||||||||||||| || ||||| Sbjct 406 ATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 443 >seq2393 Length=4323 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| ||||||||||| || || || | | || || Sbjct 1947 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCT 2006 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||| | || ||||| || | || | || ||||| ||| Sbjct 2007 AACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGA 2066 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| || | ||||| || || |||||||| | ||||| ||||| Sbjct 2067 ATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGAGTAATAGTCTTG 2126 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||| ||||| Sbjct 2127 CCTGTGAGAGTCTTAACGAAGATCTGCAT 2155 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| ||||||||||| || || || | | || || Sbjct 915 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCT 974 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||| | || ||||| || | || | || ||||| ||| Sbjct 975 AACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGA 1034 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| || | ||||| || || |||||||| | || || ||||| Sbjct 1035 ATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACCTCAAGGGTGATAGTCTTG 1094 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || ||||| ||||| ||||| Sbjct 1095 CCAGTAAGAGTTTTCACAAAGATCTGCAT 1123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359817480073821