Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq21875 170 5e-37 seq2393 152 1e-31 seq34640 132 1e-25 >seq21875 Length=4161 Score = 170 bits (188), Expect = 5e-37 Identities = 170/219 (78%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 || ||||||||||| || || || || || ||||||||||| |||||||| ||| Sbjct 440 CAGATTTTCGTGAAGACCCTGACCGGGAAGACGATCACCCTTGAGGTGGAG---TCAAAC 384 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| |||||||| || || ||||| |||||||| ||||| ||||| || |||||| Sbjct 383 GACACGATCGAGAATGTGAAGTCTAAGATCCAGGACAAGGAAGGGATCCCGCCCGACCAG 324 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || |||| |||||||||||||| |||||||| || || || || || ||||| || ||| Sbjct 323 CAGAGACTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACGCTGGCCGACTACAAC 264 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||| || || || || || || || || ||||||||| Sbjct 263 ATCCAGAAGGAGTCCACCCTCCACCTGGTCTTGAGACTC 225 >seq2393 Length=4323 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||||||||| || || || || |||||||| |||||||| || Sbjct 1120 CAGATCTTTGTGAAAACTCTTACTGGCAAGACTATCACCCTTGAGGTGGAGTCGAATGAT 1061 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| || || ||||| |||||||||||| Sbjct 1060 ACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGGACCAGCAA 1001 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || ||| | |||||||| |||||||| || || || ||| || Sbjct 1000 CGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACTACAACATC 941 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 940 CAGAAGGAGTCTACCCTTCACCTGGTT 914 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||||||||| || || || || || |||||||| || Sbjct 2152 CAGATCTTCGTTAAGACTCTCACAGGCAAGACTATTACTCTTGAGGTGGAGTCGAATGAT 2093 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| || || ||||| |||||||||||| Sbjct 2092 ACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGGACCAGCAA 2033 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || ||| | |||||||| |||||||| || || || ||| || Sbjct 2032 CGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACTACAACATC 1973 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 1972 CAGAAGGAGTCTACCCTTCACCTGGTT 1946 >seq34640 Length=3269 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| |||||||| || ||| Sbjct 1339 CAGATCTTCGTTAAGACCCTGACGGGCAAGACAATCACGCTCGAGGTCGAGTCGAATGAC 1280 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || ||||| || |||||||| Sbjct 1279 ACCATCGAGAATGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 1220 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || || ||||| ||||| || || ||| || Sbjct 1219 CGGTTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGGACGCTTGCGGACTACAACATC 1160 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 1159 CAGAAGGAGTCGACGCTGCACCTGGT 1134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203123340947122