Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq21875 147 2e-30 seq2393 100 3e-16 >seq21875 Length=4161 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || | || ||||| || || ||| ||||||||| ||||| ||||||| Sbjct 215 CGCCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 274 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCG 41752 || || | |||| ||||||||||| |||||||| ||||| | ||| ||||| ||| Sbjct 275 CCAGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCG 334 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC 41812 ||| | || ||||||||| ||| || ||||| | | |||||| | |||||| Sbjct 335 GGATCCCT-TCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCC 393 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || ||||| || || ||||| ||||| |||||||||||||| || Sbjct 394 ACCTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 >seq2393 Length=4323 Score = 100 bits (110), Expect = 3e-16 Identities = 170/240 (71%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| || ||||| || || | ||||| || || || ||||||||| ||||| | Sbjct 1922 CATCACA-CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGT 1980 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | || || | | || || | ||||||||| || || || || || || |||| Sbjct 1981 AGTCAGCCAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGT 2040 Query 41748 CCG-CGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCT 41805 ||| ||||| | | |||||||||| ||| | || | ||||| | || || | Sbjct 2041 CCGGCGGGATCCC-CTCCTTGTCC-TGAATCTTCGACTTCACATTTTCGATGGTATCATT 2098 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||||||| | || || || || || || || ||||| ||||| |||||||| || Sbjct 2099 CGACTCCACCTCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAACGAAGATCTGCATCTT 2158 Score = 89.7 bits (98), Expect = 5e-13 Identities = 166/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| || ||||| || || | ||||| || || || ||||||||| ||||| | Sbjct 890 CATCACA-CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGT 948 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | || || | | || || | ||||||||| || || || || || || |||| Sbjct 949 AGTCAGCCAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGT 1008 Query 41748 CCG-CGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCT 41805 ||| ||||| | | |||||||||| ||| | || | ||||| | || || | Sbjct 1009 CCGGCGGGATCCC-CTCCTTGTCC-TGAATCTTCGACTTCACATTTTCGATGGTATCATT 1066 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||||| | || || || || || || || || || || || |||||||| Sbjct 1067 CGACTCCACCTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462076240155600