Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq20 114 3e-20 seq15 114 3e-20 seq16 86.0 1e-11 >seq20 Length=978369 Score = 114 bits (126), Expect = 3e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT-ATGGG 230474 ||||| || || |||| ||||| | || |||||||||||||| ||| || ||| Sbjct 867233 GAGTTTATCTGCCACGCGCTTCCAGTAAGACTCATTGGCATGAACGC-GAAGTTGATGAC 867175 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 | |||||||||| ||||| || ||||| | |||| ||||||| | |||| || Sbjct 867174 AGAGTACATCGAGTTCGTTGCGGACCGACTGCTTGTGTCACTTGGCGAGAAGAAGCACTA 867115 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 |||| | | ||||||| || |||||| | || |||||||| || ||| ||||||| Sbjct 867114 CAACGTGTCGCAGCCCTTTGACTTCATGGAGATGATCTCGCTTCAGGGCAAGGCCAACTT 867055 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||| || | | | ||| |||| || || | | ||||||| ||||| Sbjct 867054 CTTTGAGAGGAGGGTCGGTGAGTACCAAAAGGCTGGTGTCATGAA 867010 >seq15 Length=659801 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| ||||| | || |||||||||||||| || || |||| | Sbjct 501807 GAGTTTATCTGCGACGCGCTTCCAGTAAGACTCATTGGCATGAACGCGGAGCTGATGGCA 501748 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 | |||||||| || || || ||||| | |||| ||||||| | ||||| ||| Sbjct 501747 CGTTACATCGAGTTTGTTGCGGACCGACTGCTTGTGTCACTTGGCGAGGAGAAGCACTAC 501688 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | ||||||| || |||||| | || |||||||| || ||||| || ||| Sbjct 501687 AACGTGTCGCAGCCCTTTGACTTCATGGAGATGATCTCGCTTCAGGGCAAGACGAATTTC 501628 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 || || ||| || || || || || | | ||||||| |||| Sbjct 501627 TTTGAGAAGAAGGTGAGCGAGTACCAAAAGGCTGGTGTCATGA 501585 >seq16 Length=800739 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||| |||||||||| || ||||||| || |||||||||||||||||||||||| Sbjct 203215 CTAGCTCAGTTGGTAGAGCGCGAGGCTTTTAACCTCGTGGTCGTGGGTTCGAGCCCCACG 203274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057797448948170