Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 316 2e-81 seq20 253 2e-62 seq30 145 8e-30 seq25 145 8e-30 seq36 136 4e-27 >seq15 Length=659801 Score = 316 bits (350), Expect = 2e-81 Identities = 575/827 (70%), Gaps = 16/827 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||| | |||||||| ||| | ||| | |||||||| | |||| || Sbjct 502503 GAACCGCTGCAACAGGAGAACCCTTTCCGCTACGTCCTCTTCCCCATCAAGTACCATGAT 502444 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | ||| || Sbjct 502443 ATATGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACTTG 502384 Query 116696 TCCAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| | || | |||| || |||||||| || Sbjct 502383 GGCAACGACATGAAGGACTGGGTGACGCTC-AGCGCGGATGAGCAGCACTTCATCAAACA 502325 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| || || ||||||| |||||| |||||||||| |||||||||| |||| || Sbjct 502324 CGTGCTTGCATTCTTCGCCGGCAGCGATGGCATCGTCATGGAGAATCTGGCGCAGCGGTT 502265 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | || ||| |||| | ||||||||| ||||||||| || ||| | ||||| Sbjct 502264 CATGAACGATGTGAAGGTACCGGAGGCGCGGGCCTTCTACGGGTTCCAGCTGATGATGGA 502205 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTG-CGCTCTTCGGAGG 116933 |||| | |||||||| | |||||| || | |||||||| | || | || ||| Sbjct 502204 GAACATCCACTCGGAGACGTATTCTGTGCTGCTGGACACGTATATCACGGACAGCG-AGG 502146 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||||| || || || |||| ||| |||| | || ||| || | ||||||| || | Sbjct 502145 AGAAGCTGCGACTGCTGCACGCGATCCAGACCGTCCCATGCATCCAGAAGAAGGCAGACT 502086 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 ||||| |||| ||||| | | || | | |||| ||||| ||| | | ||| | Sbjct 502085 GGGCGATGCGGTGGATTG---GGAGCGGTACAAGCTTCCAGGAGCGACTGATCGGCTTTG 502029 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | || || |||||| | ||||| || || ||| || | || ||| | ||||| | Sbjct 502028 CCGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTGCGCTGTTCTGGATGAAGAAGC 501969 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 ||||||| ||||| || ||||| |||||||| ||||||||||| | |||||||| |||| Sbjct 501968 GCGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCGACGAGGGCCTGC 501909 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCG 117229 | ||| ||||||||| |||||| ||| ||| | | | | | | |||| | | Sbjct 501908 ACACCGATTTTGCCTGTCTGCTGTACAACTCGCACATCAAG-AACAAGCTGTCGCGCGAG 501850 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGC 117288 ||||| ||||||| || |||||||| | |||||||| ||| || || ||| || Sbjct 501849 CGCGTACTGGAGATCATCGTGGACGCGGTGGACATCGAGC-GCGAGTTTATCTGCGACGC 501791 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347 ||| || || | || | || | || ||| | | |||| | | ||||||||||| | Sbjct 501790 GCTTCCAGTAAGACTCATTGGCATGAA-CGCGGAGCTGATGGCACGTTACATCGAGTTTG 501732 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394 | || ||| | ||||| | || | || | |||||||||||| Sbjct 501731 TTGCGGACCGACTGCTTGTGTCACTTGGCGAGGAGAAGCACTACAAC 501685 >seq20 Length=978369 Score = 253 bits (280), Expect = 2e-62 Identities = 542/798 (68%), Gaps = 20/798 (3%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| | || || || ||| | || | || ||||| | | || ||| Sbjct 867929 GAGCCGCTGCTGAGGGACAATCCTTTCCGCTGTGTCCTCTTTCCCATCAAGTGCCACGAC 867870 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| ||| |||| | ||| | ||||||| || || ||||| ||| || Sbjct 867869 ATATGGAAGATGCACAAGGTGCAGGAGAGCTGCATCTGGACGGTGGATGAGGTTGACTTG 867810 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||| |||| ||| ||||||| | | | || | |||| || ||||| |||||| Sbjct 867809 GGCAACGACATGAGAGACTGGGCGAAGCTCAGCGCGGATGAGCAGCACTTCATTAAGCAC 867750 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||| || || || |||| |||||| |||||||||| |||||| ||| |||| ||| Sbjct 867749 GTGCTTGCATTCTTTGCCGGCAGCGATGGCATCGTCATGGAGAATTTGGCGCAGCGGTTC 867690 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || ||| |||| | |||||||| | |||||||| | ||| | |||||| Sbjct 867689 ATAAACGATGTGAAGGTACCGGAGGCGCGATTTTTCTACGGGCTGCAGCTGATGATGGAG 867630 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGA 116934 ||| | ||||| ||||||||||| || | |||||||| | | | | | ||| Sbjct 867629 AACATCCACTCAGAAATGTATTCTCTGCTGCTGGACACGTATATCACAGACAGC-GCGGA 867571 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| | || || || |||| ||| |||| | || ||| || | ||||||| || || Sbjct 867570 GAAGGTGCGACTGCTGCACGCGATCCAGACCGTTCCATGCATCCAGAAGAAGGCAGACTG 867511 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 |||| |||| ||| | || || | || |||| ||||| ||| | | ||| || Sbjct 867510 GGCGATGCGGTGG---GTTGGGAGCGGTGCAAGCTTCCAGGAGCGACTGATCGGCTTTGC 867454 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || || |||||| | ||||| || || ||| || |||| ||||| | ||| || Sbjct 867453 CGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTGCGCTATTCTGGCTGAGGAAGCG 867394 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 ||||| ||||| || ||||| |||||||| ||||||||||| | |||||||| ||||| Sbjct 867393 TGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCGACGAGGGCCTGCA 867334 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC--GACCGAG----CGCG-G 117227 ||| || |||||| |||||| ||| | || || | || | || |||| | Sbjct 867333 CACCGATTTCGCCTGTCTGCTGTACAA----CTCGTACATCAAGAACAAGCTGTCGCGCG 867278 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAA 117286 |||||| ||||||| || |||||| | |||||||| ||| || || | | Sbjct 867277 AGCGCGTGCTGGAGATCATCGTGAGCGCGGTGGACATCGAGC-GCGAGTTTATCTGCCAC 867219 Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAA-ACGATGTCGCAATACATCGAGTT 117345 ||||| || || | || | || | || ||||| |||| | | ||||||||||| Sbjct 867218 GCGCTTCCAGTAAGACTCATTGGCATGAA-CGCGAAGTTGATGACAGAGTACATCGAGTT 867160 Query 117346 CGTCGCCGACAGGCTGCT 117363 ||| || ||| | ||||| Sbjct 867159 CGTTGCGGACCGACTGCT 867142 >seq30 Length=3727717 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || || | |||| || || | | | Sbjct 1379066 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379007 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| ||||||| Sbjct 1379006 GACACGATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1378948 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 1378947 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAA 1378888 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | || ||| Sbjct 1378887 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 1378839 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || || | |||| || || | | | Sbjct 1379294 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379235 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| ||||||| Sbjct 1379234 GACACGATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1379176 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 1379175 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAA 1379116 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | || ||| Sbjct 1379115 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 1379067 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || || | |||| || || | | | Sbjct 1380614 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1380555 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| ||||||| Sbjct 1380554 GACACGATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1380496 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 1380495 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAA 1380436 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | || ||| Sbjct 1380435 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 1380387 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || || | |||| || || | | | Sbjct 1375630 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1375571 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| ||||||| Sbjct 1375570 GACACGATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1375512 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||||| || | ||||| || |||||||| Sbjct 1375511 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGCGGAGGGCCGCACGCTGGCGGACTACAA 1375452 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| |||| || | |||||| Sbjct 1375451 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGTCTGCGCGGCGGC 1375403 >seq25 Length=1382006 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| || || | |||| ||||| | | | Sbjct 844249 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAAGTCGAGTCGAGC 844190 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || |||| ||||| |||||||||||| |||||||| Sbjct 844189 GATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 844130 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 844129 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGTCGCACGCTGGCGGACTACAAC 844070 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||||| |||| || ||| ||||| || | || ||| Sbjct 844069 ATCCAGAAGGAGTCCACGTTGCACCTGGTGCTGCGCCTGCGCGGTGGC 844022 >seq36 Length=555156 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || || | |||| || || | | | Sbjct 340789 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACGATTGCGCTCGAGGTTGAGTCGAGC 340730 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || || | ||||| |||||||||||| |||||||| Sbjct 340729 GATACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 340670 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 340669 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 340610 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| |||||||||| || ||| ||||| || | || ||| Sbjct 340609 ATTCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 340562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206583569840