Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21 268 8e-67 seq15 226 3e-54 seq20 188 6e-43 seq30 93.3 4e-14 seq36 87.8 2e-12 >seq21 Length=1031504 Score = 268 bits (296), Expect = 8e-67 Identities = 517/750 (69%), Gaps = 12/750 (2%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||| ||||| ||||| || || || ||||| || || || | || |||||| Sbjct 213735 GTGTACTCGACAATCTCGGTGCACAGGTTCGAGCACTTGATGGTCCCAAGGTTCCTCTGG 213676 Query 23123 TT-GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 || | ||| ||| || || |||||| |||| ||||| || ||||||||||| | Sbjct 213675 TTAGATTTCTCG-TTACATTGGTCCTTGAAGAGAATGTAAGGGCCGCCCGTCTCGATTAG 213617 Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG--CCT 23239 |||||| | || || ||||| | ||| ||| | | | ||| | | |||| || Sbjct 213616 CGACTCCAGTATGGCAAACCACAAATCCTGCGCGGGTATA-GTC-CTCTTACCACGACCC 213559 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC- 23298 || |||||||| | ||||| | | | | |||| | || ||||| || ||| || || Sbjct 213558 TCGGCCTCGTACCTCTGGTAAAGCTCATTAAATGCCGCGCCGTAGCAATCGCTGAGACCC 213499 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 |||| ||| || | |||||| ||||||| || | | || ||| |||| || Sbjct 213498 GGGCAGTTGTGGGGGTC-CATGAGCGTCCACATCCCCTCGCTCTTCACCCGTGTCATGAA 213440 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| || | ||| || ||||||| || |||||||| ||| || || ||||| || Sbjct 213439 CAGATCTGGGACCCAAAGCCCGTAGAAGAGGTCGCGGGCACGCTGATCATCCTTGCCCGT 213380 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 ||| |||| || ||| | || | ||| || ||||||||||| ||||| | ||| Sbjct 213379 GTTGCGCTTCAGCAACAGGAAGCCAAAAATGTCGGCGTGCCACGGCTCAAGGTAGATGGC 213320 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 || |||||| | |||| ||| ||||| || ||||| || || ||||||||| | || Sbjct 213319 GAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGCGCGGTGTTGTTGAAGAC 213260 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG-CCCGCCACACTCG-AACCT 23596 | | |||||||||||| ||||| |||| ||| | || ||| || | | || Sbjct 213259 CCGCAACATCGGCACGAGCCCGTTCGACGTACCG--TTCGTGCCGGCAATGTAGCTGCCC 213202 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 | || || | |||||| || || | || ||||| ||| | | ||| |||| || Sbjct 213201 TCCGCGCGGATGTTGTGCACATGCAGGCCAATGCCACCGGCTGCTTTGCTGATCAGGGCA 213142 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || | || || |||||||| || |||||||||||||| ||||||| || |||| || Sbjct 213141 CACTCCTTGAGCGTGTCGTAAATACCCTCGATGCTGTCATCTTTGGATGCAACCAGAAAG 213082 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 || || |||||||| || |||||| |||| ||| || ||||| | ||||| || Sbjct 213081 CATGAGCTCATTTGCGGCTTTGGCGTACCGGCATTGAAGAGAGTCGGAGTCGCGTGAGTG 213022 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTG 23806 ||| |||| | ||||| | ||||| ||| Sbjct 213021 AAGAATCCTTGTGACATCAAGTTGTATGTG 212992 >seq15 Length=659801 Score = 226 bits (250), Expect = 3e-54 Identities = 508/758 (67%), Gaps = 10/758 (1%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || ||||||||| | || || ||||||| |||||| || || | |||||| || Sbjct 502335 TTCATCAAACACGTGCTTGCATTCTTCGCCGGCAGCGATGGCATCGTCATGGAGAATCTG 502276 Query 57738 GTCGAAAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | || | | |||| | || ||| | || |||||||| | ||| ||||| || | Sbjct 502275 G-CGCA-GCGGTTCATGAACGATGTGAAGGTACCGGAGGCGCGGGCCTTCTACGGGTTCC 502218 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || || || | |||||| | || | || ||||| | | Sbjct 502217 AGCTGATGATGGAGAACATCCACTCGGAGACGTATTCTGTGCTGCTGGACACGTATATCA 502158 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA 57915 ||||| ||| ||||| | ||||| | |||||||| | || | || ||| | Sbjct 502157 CGGACAGCGAGGAGAAGCTGCGACTGCTGCACGCGATCCAGACCGTCCCATGCATCCAGA 502098 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 |||||||||| ||| | || ||||| |||| || | ||| ||| | | Sbjct 502097 AGAAGGCAGACTGGGCGATGCGGTGGATTGGGAGCGGTACAAGC---TTCCAGGAGCGAC 502041 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | |||| || ||||| || || || |||||||| || || ||| || | || | Sbjct 502040 TGATCGGCTTTGCCGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTGCGCTGTTCT 501981 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 |||||||||| |||||||||||||| || |||||||| ||||| ||| | || ||||||| Sbjct 501980 GGATGAAGAAGCGCGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCG 501921 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAAC 58152 ||||||| || || || |||||||| || || ||| |||| ||||| || || | Sbjct 501920 ACGAGGGCCTGCACACCGATTTTGCCTGTCTGCTGTACAACTCGCACATCAAGAACAAGC 501861 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | |||| || ||| | |||| || ||| || ||||| | ||||| |||||| Sbjct 501860 TGTCGCGCGAGCGCGTACTGGAGATCATCGTGGACGCGGTGGACATCGAGCGCGAGTTTA 501801 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 || ||| || || || || | | || |||||| || ||||| || |||| Sbjct 501800 TCTGCGACGCGCTTCCAGTAAGACTCATTGGCATGAACGCGGAGCTGATGGCACGTTACA 501741 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGA 58332 | ||||||||||| ||| |||| | | ||| | ||| || |||||| | Sbjct 501740 TCGAGTTTGTTGCGGACCGACTGCTTGTGTCACTTGGCGAGGAGAAGCACTACAACGTGT 501681 Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 | || ||||| || ||| | |||||||||| |||||||||| || || || || | Sbjct 501680 CGCAGCCCTTTGACTTCATGGAGATGATCTCGCTTCAGGGCAAGACGAATTTCTTTGAGA 501621 Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 | || || ||||| || ||||| || || |||||| Sbjct 501620 AGAAGGTGAGCGAGTACCAAAAGGCTGGTGTCATGAGC 501583 >seq20 Length=978369 Score = 188 bits (208), Expect = 6e-43 Identities = 481/721 (67%), Gaps = 16/721 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || ||||| |||||| | || || || |||| |||||| || || | ||||||||| Sbjct 867761 TTCATTAAGCACGTGCTTGCATTCTTTGCCGGCAGCGATGGCATCGTCATGGAGAATTTG 867702 Query 57738 GTCGAAAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | || | | |||| || || ||| | || |||||||| ||| || ||||| | | Sbjct 867701 G-CGCA-GCGGTTCATAAACGATGTGAAGGTACCGGAGGCGCGATTTTTCTACGGGCTGC 867644 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || |||||||||||||| || || | || ||||| | | Sbjct 867643 AGCTGATGATGGAGAACATCCACTCAGAAATGTATTCTCTGCTGCTGGACACGTATATCA 867584 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA 57915 |||| || ||||| ||||| | |||||||| | || | || ||| | Sbjct 867583 CAGACAGCGCGGAGAAGGTGCGACTGCTGCACGCGATCCAGACCGTTCCATGCATCCAGA 867524 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 |||||||||| ||| | || ||| | |||| || | ||| ||| | | Sbjct 867523 AGAAGGCAGACTGGGCGATGCGGTGGGTTGGGAGCGGT---GCAAGCTTCCAGGAGCGAC 867467 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | |||| || ||||| || || || |||||||| || || ||| || |||| | Sbjct 867466 TGATCGGCTTTGCCGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTGCGCTATTCT 867407 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || ||| ||| || ||||||||||| || |||||||| ||||| ||| | || ||||||| Sbjct 867406 GGCTGAGGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCG 867347 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAAC 58152 ||||||| || || || ||||| || || || ||| |||| |||| || || | Sbjct 867346 ACGAGGGCCTGCACACCGATTTCGCCTGTCTGCTGTACAACTCGTACATCAAGAACAAGC 867287 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAG-GCGGTCGCGATCGAAAATGAGTTT 58211 | |||| || ||| | |||| || ||| ||| ||||| | ||||| |||||| Sbjct 867286 TGTCGCGCGAGCGCGTGCTGGAGATCATC-GTGAGCGCGGTGGACATCGAGCGCGAGTTT 867228 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 || | | || || || || | | || |||||| | |||||| || ||||| Sbjct 867227 ATCTGCCACGCGCTTCCAGTAAGACTCATTGGCATGAACGCGAAGTTGATGACAGAGTAC 867168 Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTG-GAG-AGCGTCATTACAACA 58329 || ||||| ||||| ||| |||| | | ||| | | ||| || || |||||| Sbjct 867167 ATCGAGTTCGTTGCGGACCGACTGCTTGTGTCACT--TGGCGAGAAGAAGCACTACAACG 867110 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | | || ||||| || ||| | |||||||||| |||||||| | ||||| || | Sbjct 867109 TGTCGCAGCCCTTTGACTTCATGGAGATGATCTCGCTTCAGGGCAAGGCCAACTTCTTTG 867050 Query 58390 a 58390 | Sbjct 867049 A 867049 >seq30 Length=3727717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| ||||| | |||| || || || Sbjct 1379067 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAG 1379008 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| || || ||||||||| ||| | ||||| ||||| Sbjct 1379007 CGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1378948 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || || ||||| ||| |||| || Sbjct 1378947 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGA 1378912 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| ||||| | |||| || || || Sbjct 1379295 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAG 1379236 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| || || ||||||||| ||| | ||||| ||||| Sbjct 1379235 CGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1379176 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || || ||||| ||| |||| || Sbjct 1379175 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGA 1379140 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| ||||| ||||| ||||| ||||| | |||| || || | Sbjct 1380618 AACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTC 1380559 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 | ||||| |||| | ||||| || || ||||||||| ||| | ||||| || Sbjct 1380558 GAGCGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 1380499 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || || || ||||| ||| |||| || Sbjct 1380498 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGA 1380460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| ||||| | |||| || || || Sbjct 1375631 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAG 1375572 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| || || ||||||||| ||| | ||||| ||||| Sbjct 1375571 CGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1375512 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| ||| || || || || || || Sbjct 1375511 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGCGGAGGGCCGCACGCTGGCGGACTACAA 1375452 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | ||| | ||||| Sbjct 1375451 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGTCTGCGCGGCGG 1375404 >seq36 Length=555156 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| ||||| ||||| | |||| ||||| || Sbjct 340790 CATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACGATTGCGCTCGAGGTTGAGTCGAG 340731 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 340730 CGATACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 340671 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 340670 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 340635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755484295280