Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq30 98.7 1e-15 seq20 95.1 1e-14 >seq30 Length=3727717 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139536 GGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGC 139595 ||||||| || | ||||| || | ||| | ||| ||||| || || ||||| || || Sbjct 1375402 GGCCGCCGCGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 1375461 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| || || ||| ||||||| || ||||| || || | Sbjct 1375462 CCAGCGTGCGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCG 1375521 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| || ||||| ||| || || | | || | |||||| | | ||||| Sbjct 1375522 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCA 1375581 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | | | |||||||||||||| ||| || ||||| || ||||| Sbjct 1375582 CCTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1375630 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 1378839 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 1378898 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 1378899 CAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 1378958 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| | | |||||| Sbjct 1378959 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCAC 1379018 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | | | |||||||||||||| ||| || ||||| || ||||| Sbjct 1379019 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 1379067 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 1379126 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 1379127 CAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 1379186 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| | | |||||| Sbjct 1379187 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCAC 1379246 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | | | |||||||||||||| ||| || ||||| || ||||| Sbjct 1379247 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 1380387 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 1380446 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 1380447 CAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 1380506 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| | | |||||| Sbjct 1380507 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCAC 1380566 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | | | |||||||||||||| ||| || ||||| || ||||| Sbjct 1380567 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1380614 >seq20 Length=978369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 248/376 (66%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 52699 GGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCAC 52758 ||| | ||||| || || ||||| ||||| ||| | || ||||||||||| || ||||| Sbjct 867392 GGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCGACGAGGGCCTGCAC 867333 Query 52759 ACAGATTTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAA 52818 || ||||| || ||| || || || || | | || | || |||| || Sbjct 867332 ACCGATTTCGCCTGTCTGCTGTACAACTCGTACATCAAGAACAAGCTGTCGCGCGAGCGC 867273 Query 52819 ATTCTAGACATGTTTAAAGAG-GCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTT 52877 | || || || | ||| || || ||||| || |||||| | |||| | Sbjct 867272 GTGCTGGAGATCATCGT-GAGCGCGGTGGACATCGAGCGCGAGTTTATCTGCCACGCGCT 867214 Query 52878 ACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGC 52937 || ||| | | | ||||||||||||| ||||| |||||||||||||| ||||| Sbjct 867213 TCCAGTAAGACTCATTGGCATGAACGCGAAGTTGATGACAGAGTACATCGAGTTCGTTGC 867154 Query 52938 GGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTC 52997 |||| ||||| | || || || || ||| |||| || | | | |||||| Sbjct 867153 GGACCGACTGCTTGTGTCACTTGGCGAGAAGAAGCACTACAACGTGTCGCAGCCCTTTGA 867094 Query 52998 GTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGA 53057 || ||| | | || ||||| ||||||| | ||||| || ||||| | || || || Sbjct 867093 CTTCATGGAGATGATCTCGCTTCAGGGCAAGGCCAACTTCTTTGAGAGGAGGGTCGGTGA 867034 Query 53058 GTACAAAATGTTTGGT 53073 |||| ||| | |||| Sbjct 867033 GTACCAAAAGGCTGGT 867018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051852632800