Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq15 84.2 2e-11 >seq15 Length=659801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 174/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 50494 GGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCAC 50553 ||| | ||||| || || ||||| ||||| ||| | || ||||||||||| || ||||| Sbjct 501966 GGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCGACGAGGGCCTGCAC 501907 Query 50554 ACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACA 50613 || || ||||| ||| || ||||| ||| | | || | || | || ||| Sbjct 501906 ACCGATTTTGCCTGTCTGCTGTACAACTCGCACATCAAGAACAAGCTGTCGCGCGAGCGC 501847 Query 50614 ATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTA 50673 | |||| || || || || || |||||||| |||||| || ||||| | Sbjct 501846 GTACTGGAGATCATCGTGGACGCGGTGGACATCGAGCGCGAGTTTATCTGCGACGCGCTT 501787 Query 50674 CCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAG-TACATTGAGTTTGTTGC 50732 || || | | | ||||||||||| || ||||| || | ||||| ||||||||||| Sbjct 501786 CCAGTAAGACTCATTGGCATGAACGCGGAGCTGATG-GCACGTTACATCGAGTTTGTTGC 501728 Query 50733 AGACAGATTG-TTGT 50746 ||| || || |||| Sbjct 501727 GGACCGACTGCTTGT 501713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507001984484880