Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq15 143 4e-29 seq20 102 1e-16 >seq15 Length=659801 Score = 143 bits (158), Expect = 4e-29 Identities = 586/905 (65%), Gaps = 38/905 (4%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || ||||||| ||| ||||| || ||| | |||||| || || || | | Sbjct 502468 CCTCTTCCCCATCAAGTACCATGATATATGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 502409 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| || ||| ||| || | || |||| ||| | | Sbjct 502408 CTGGACGGTGGAGGAGATCGACTTGGGCAACGACATGAAGGACTGGGTGACGCTCAGCGC 502349 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || ||| | | || ||||| |||||| |||||| || Sbjct 502348 GGA---TGAGCAGCACTTCATCAAACACGTGCTTGCATTCTTCGCCGGCAGCGATGGCAT 502292 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 ||||| || |||||| | || ||| | || ||| | || |||| | | Sbjct 502291 CGTCATGGAGAATCTGGCGCAGCGGTTCATGAACGATGTGAAGGTACCGGAGGCGCGGGC 502232 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| | ||||| |||||| | |||||||| | ||| ||| ||| | Sbjct 502231 CTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTATTCTGTGCTGCT 502172 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGG 125352 |||| ||| || | || | || | | || | || | |||| ||| | || | Sbjct 502171 GGACACGTATAT-CACGGACAGCGAGGAGAAGCTGCGACTGCTGCACGCGATCCAGACCG 502113 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACG--ACAAGTC 125410 | || | || | || ||||| | |||| ||| |||||||| | || ||||| | Sbjct 502112 TCCCATGCATCCAGAAGAAGGCAGACTGGGCGATGCGGTGGATTGGGAGCGGTACAAG-C 502054 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTA 125469 ||| || ||||| | | || ||||| || |||||||| ||||| || |||| Sbjct 502053 TTCCAG----GAGCGACTGATCGGCTTTGCCGCGGTGGAGGGCATATTCTTCTCCGGGTC 501998 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || || | | | || ||| | ||||||||||| || ||||| || |||||| ||| | Sbjct 501997 CTTCTGTGCGC-TGTTCTGGATGAAGAAGCGCGGCCTGATGCCGGGGCTGACGTTCAGCA 501939 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 | ||| | || || || ||||||||||| ||| || |||||| ||| |||| || Sbjct 501938 ATGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGATTTTGCCTGTCTGCTGT---ACA 501882 Query 125590 ACTATCTGCGTCCCGA-----GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 ||| | | || || || | | |||| | | || |||| | | Sbjct 501881 ACTCGC-ACATCAAGAACAAGCTGTCGCGCGAGCG-CGTACTGGAGATCATCGT------ 501830 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 || || ||| || || | |||||| | ||| | || || || || | ||||| Sbjct 501829 GGACGCGGTGGACATCGAGCGCGAGTTTATCTGCGACGCGCTTCCAGTAAGACTCATTGG 501770 Query 125705 CATGAACTGCAAGCTAATGTGCGAG-TACATAGAGTTTGTGGCAGATCGTCTAC-TGTAC 125762 ||||||| |||| ||| || | ||||| |||||||| || || || || | ||| Sbjct 501769 CATGAACGCGGAGCTGATG-GCACGTTACATCGAGTTTGTTGCGGACCGACTGCTTGTGT 501711 Query 125763 GAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 | ||| | | ||| ||||||| | | |||||||| |||||| | || Sbjct 501710 CACTTGGCGAGGAG-AAGCACTACAACGTGTCGCAGCCCTTTGACTTCATGGAGATGATC 501652 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC--AAACGCTACG 125880 || || |||| ||||| || || || ||||||||||| ||||||||| ||| ||| | Sbjct 501651 TCGCTTCAGGGCAAGACGAATTTCTTTGAGAAGAAGGTGAGCGAGTACCAAAAGGCT--G 501594 Query 125881 GTGTC 125885 ||||| Sbjct 501593 GTGTC 501589 >seq20 Length=978369 Score = 102 bits (112), Expect = 1e-16 Identities = 390/599 (65%), Gaps = 24/599 (4%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGC---CTC 125050 ||| |||||||||| || || ||||| ||| | ||| |||| || |||| || Sbjct 867894 CCTCTTTCCCATCAAGTGCCACGACATATGGAAGATGCACAA---GGTGCAGGAGAGCTG 867838 Query 125051 CTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTT 125110 | | |||||||| || ||||| || || ||| ||| || || |||| || | Sbjct 867837 CATCTGGACGGTGGATGAGGTTGACTTGGGCAACGACATGAGAGACTGGGCGAAGCTCAG 867778 Query 125111 GACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 | || ||||| | || || |||| | | || |||||||||||| |||||| Sbjct 867777 CGCGGA---TGAGCAGCACTTCATTAAGCACGTGCTTGCATTCTTTGCCGGCAGCGATGG 867721 Query 125171 AATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||||| || ||| || | || ||| | || ||| | || |||| | Sbjct 867720 CATCGTCATGGAGAATTTGGCGCAGCGGTTCATAAACGATGTGAAGGTACCGGAGGCGCG 867661 Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 | || ||||| | || | ||||| |||||| | ||||| |||||||| ||| || Sbjct 867660 ATTTTTCTACGGGCTGCAGCTGATGATGGAGAACATCCACTCAGAAATGTATTCTCTGCT 867601 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCT-CT--TTAACGCAATCGA 125347 | | |||| ||| || || | || || | | | ||| || | |||| ||| | Sbjct 867600 GCTGGACACGTATATCACAGA-CAGCG-CGGAGA-AGGTGCGACTGCTGCACGCGATCCA 867544 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--C 125405 || || || | || | || ||||| | |||| ||| |||||| | | || | Sbjct 867543 GACCGTTCCATGCATCCAGAAGAAGGCAGACTGGGCGATGCGGTGGGTTGGGAGCGGTGC 867484 Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC- 125464 ||| |||| || ||||| | | || ||||| || |||||||| ||||| || Sbjct 867483 AAG-CTTCCAG----GAGCGACTGATCGGCTTTGCCGCGGTGGAGGGCATATTCTTCTCC 867429 Query 125465 GGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 |||| || || | | | || ||||| | |||||| || || ||||| || |||||| Sbjct 867428 GGGTCCTTCTGTGCGC-TATTCTGGCTGAGGAAGCGTGGCCTGATGCCGGGGCTGACGTT 867370 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 ||| || ||| | || || || ||||||||||| ||| || || ||| ||| |||| Sbjct 867369 CAGCAATGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGATTTCGCCTGTCTGCTGT 867311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041053312840