Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 1e-13 seq36 86.0 5e-12 seq30 82.4 6e-11 >seq25 Length=1382006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||||||| |||||||| || || ||||| ||||||| || | ||||| Sbjct 844040 CACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGACCCTCCTC 844099 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | |||||| ||||| Sbjct 844100 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 844159 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | ||| ||||||| | ||| ||||| | ||| || || Sbjct 844160 AATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCGACTTCGAGCGCAATCGTCTT 844219 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| || ||||| Sbjct 844220 GCCGGTCAGCGTCTTCACAAAGATCTGCAT 844249 >seq36 Length=555156 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| ||||| ||||| ||||| | || | | ||||| Sbjct 340580 CACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 340639 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | |||||| ||||| Sbjct 340640 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 340699 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | ||| ||||||| | ||| |||| | ||| || || Sbjct 340700 GATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCAACCTCGAGCGCAATCGTCTT 340759 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || ||||| || ||||| Sbjct 340760 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 340789 >seq30 Length=3727717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| ||||||| || | | ||||| Sbjct 1378857 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTCCTC 1378916 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| ||| || | |||||| ||||| Sbjct 1378917 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1378976 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | ||| || |||| | |||| |||| | ||| || || Sbjct 1378977 GATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGTCTT 1379036 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || || || ||||| Sbjct 1379037 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379066 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| ||||||| || | | ||||| Sbjct 1379085 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTCCTC 1379144 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| ||| || | |||||| ||||| Sbjct 1379145 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1379204 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | ||| || |||| | |||| |||| | ||| || || Sbjct 1379205 GATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGTCTT 1379264 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || || || ||||| Sbjct 1379265 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379294 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| ||||||| || | | ||||| Sbjct 1380405 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTCCTC 1380464 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| ||| || | |||||| ||||| Sbjct 1380465 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1380524 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | ||| || |||| | |||| |||| | ||| || || Sbjct 1380525 GATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGTCTT 1380584 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || || || ||||| Sbjct 1380585 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 1380614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414562901944846