Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq30 89.7 5e-13 seq25 87.8 2e-12 seq28 82.4 7e-11 seq3 82.4 7e-11 >seq30 Length=3727717 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || || ||| | Sbjct 1378852 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCC 1378911 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || || || || || ||| Sbjct 1378912 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1378971 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | || || ||||||||| ||| ||||| || | || || || | || || Sbjct 1378972 TCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTC-GCTCGACTCCACCTCGAGCGCAAT 1379030 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||| ||||||||||||| Sbjct 1379031 CGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGC 1379068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || || ||| | Sbjct 1379080 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCC 1379139 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || || || || || ||| Sbjct 1379140 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1379199 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | || || ||||||||| ||| ||||| || | || || || | || || Sbjct 1379200 TCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTC-GCTCGACTCCACCTCGAGCGCAAT 1379258 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||| ||||||||||||| Sbjct 1379259 CGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGC 1379296 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || || ||| | Sbjct 1380400 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCC 1380459 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || || || || || ||| Sbjct 1380460 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1380519 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | || || ||||||||| ||| ||||| || | || || || | || || Sbjct 1380520 TCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTC-GCTCGACTCCACCTCGAGCGCAAT 1380578 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 || || || || || || ||||| |||||||||||| ||| Sbjct 1380579 CGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTTA 1380619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| || || | || |||| ||||| ||||| || || ||||| || | ||| | Sbjct 1375396 TTTACAGGCCGCCGCGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 1375455 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| | ||| ||||||| || ||| ||||||| | | ||||| | Sbjct 1375456 AGTCCGCCAGCGTGCGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGT 1375515 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || ||||||||| ||| ||||| || Sbjct 1375516 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTC-GCTC 1375574 Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || | || || || || || || || || ||||| |||||||||||| Sbjct 1375575 GACTCCACCTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1375631 >seq25 Length=1382006 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||| || || ||||| || | ||| || || || ||| Sbjct 844035 CGCAGCACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGACCC 844094 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 844095 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 844154 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | ||| || |||||||| ||| || || || | ||||| || | || || Sbjct 844155 TCCTGAATCTTGGCCTTGACATTCTCGATCGTATC-GCTCGACTCGACTTCGAGCGCAAT 844213 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || |||||||||||||||||| Sbjct 844214 CGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATG 844250 >seq28 Length=1567521 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 115609 TTGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGAT 115668 |||| | |||||||||||||||||| ||||||| ||||| || |||||||||||||| Sbjct 422855 TTGCGACCGGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGAC 422796 Query 115669 TGCGCTAC 115676 |||||||| Sbjct 422795 TGCGCTAC 422788 >seq3 Length=549492 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 378297 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 378356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448280222469240