Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 3e-15 >seq30 Length=3727717 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || || ||||| ||||||| || | || | |||| |||||||| Sbjct 1380618 AACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTC 1380559 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 | ||||| |||||| | ||| || ||| ||||| || || || || || || Sbjct 1380558 GAGCGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 1380499 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | || || | ||||| ||| || || Sbjct 1380498 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTA 1380439 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || |||||||| || | ||||| Sbjct 1380438 CAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCT 1380403 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | || | |||| ||||||||| Sbjct 1379066 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379007 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 1379006 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1378947 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| ||| || ||||| Sbjct 1378946 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1378887 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 1378886 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCT 1378855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | || | |||| ||||||||| Sbjct 1379294 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379235 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 1379234 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1379175 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| ||| || ||||| Sbjct 1379174 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1379115 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 1379114 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCT 1379083 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | || | |||| ||||||||| Sbjct 1375630 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1375571 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 1375570 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1375511 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | | || | ||||| ||| || ||||| Sbjct 1375510 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGCGGAGGGCCGCACGCTGGCGGACTACAAC 1375451 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 1375450 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCT 1375419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317654158585