Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq21 145 6e-30 seq36 104 2e-17 seq25 95.1 1e-14 seq30 86.0 5e-12 >seq21 Length=1031504 Score = 145 bits (160), Expect = 6e-30 Identities = 264/381 (69%), Gaps = 13/381 (3%) Strand=Plus/Minus Query 129998 TCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 ||||||| || || | |||| || ||| |||| |||| ||| || ||||| || |||| Sbjct 213473 TCCACATCCCCTCGCTCTTC-ACCCGTGTCATGAACAGATCTGGGACCCAAAGCCCGTAG 213415 Query 130057 AACAAATCTCG----CGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAA 130112 || | || || |||| || ||||| | ||| |||| || ||||| ||||| Sbjct 213414 AAGAGGTCGCGGGCACGCTGATC-ATCCTTG---CCCGTGTTGCGCTTCAGCAACAGGAA 213359 Query 130113 ATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT--- 130169 | ||||||||||||||||||| |||| || || || | |||||||| || || Sbjct 213358 GCCAAAAATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCGCTTACC 213299 Query 130170 GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCC 130229 ||| || ||||| |||| |||| ||| |||||| |||| |||||||| | | | | || Sbjct 213298 GCCACCCTGGTCCACGTAGCGCGCGGTGTTGTTGAAGACCCGCAACATCGGCACGAGCCC 213239 Query 130230 GTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCT 130289 ||| | ||| ||||| |||| ||||| | ||||| || || | ||| || || Sbjct 213238 GTTCGACGTACCGTTCGTGCCGGCAATGTAGCTGCCCTCCGCGCGGATGTTGTGCACATG 213179 Query 130290 TAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAAT 130349 || || ||||| ||| | ||| |||| || || || ||||| || ||||| Sbjct 213178 CAGGCCAATGCCACCGGCTGCTTTGCTGATCAGGGCACACTCCTTGAGCGTGTCGTAAAT 213119 Query 130350 GCCAACGATACTGTCTTCTTT 130370 || |||| ||||| ||||| Sbjct 213118 ACCCTCGATGCTGTCATCTTT 213098 >seq36 Length=555156 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || ||| | | || || || || | | | Sbjct 340789 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACGATTGCGCTCGAGGTTGAGTCGAGC 340730 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || || || ||||||||||| || || || || || Sbjct 340729 GATACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 340670 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| || | || |||||| Sbjct 340669 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 340610 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||| | || | || |||| ||||||| || Sbjct 340609 ATTCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 340563 >seq25 Length=1382006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || ||| | | || ||||| || | | | Sbjct 844249 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAAGTCGAGTCGAGC 844190 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || ||||| ||||||||||| || || || || || Sbjct 844189 GATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 844130 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||| | | || |||||| Sbjct 844129 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGTCGCACGCTGGCGGACTACAAC 844070 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 844069 ATCCAGAAGGAGTCCACGTTGCACCTGGTGCTGCGCCTGCGCGGTGG 844023 >seq30 Length=3727717 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| | | || || ||||| | | | Sbjct 1379066 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379007 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||||||||| || || || || || Sbjct 1379006 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1378947 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | ||||| |||||| | | || |||||| Sbjct 1378946 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1378887 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 1378886 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 1378840 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| | | || || ||||| | | | Sbjct 1379294 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379235 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||||||||| || || || || || Sbjct 1379234 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1379175 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | ||||| |||||| | | || |||||| Sbjct 1379174 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1379115 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 1379114 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 1379068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| | | || || ||||| | | | Sbjct 1380614 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1380555 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||||||||| || || || || || Sbjct 1380554 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1380495 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | ||||| |||||| | | || |||||| Sbjct 1380494 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1380435 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 1380434 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 1380388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717978862835