Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15 134 3e-26 seq21 120 6e-22 >seq15 Length=659801 Score = 134 bits (148), Expect = 3e-26 Identities = 557/857 (65%), Gaps = 30/857 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || |||||||| | |||||||| || ||||| | |||||||||||| ||||| | | Sbjct 501623 TCAAAGAAATTCGTCTTGCCCTGAAGCGAGATCATCTCCATGAAGTCAAAGGGCTGCGAC 501682 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | |||||||| || | | ||||| || |||||||| | Sbjct 501683 ACGTTGTAGTGCTTCTCCTCGCCAAGTGACACAAGCAGTCGGTCCGCAACAAACTCGATG 501742 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || ||||||| || | |||||||||||| | | |||| || || ||||| Sbjct 501743 TAACGTGCCATCAGCTCCGCGTTCATGCCAATGAGTCTTACTGGAAGCGCGTCGCAGATA 501802 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || | || || ||| | | || || || | | | |||||| Sbjct 501803 AACTCGCGCTCGATGTCCACCGCGTCCACGATGATCTCCAGTACGCGCTCGCGCGACAGC 501862 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 ||||||| | | || |||||| || | |||| | |||||| ||||||||| Sbjct 501863 TTGTTCTTGATGTGCGAGTTGTACAGCAGACAGGCAAAATCGGTGTGCAGGCCCTCGTCG 501922 Query 251860 CGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 || ||||| ||| ||| | || | ||| || ||||||| || || ||| | | || Sbjct 501923 CGCGAGATGAGCTCATTG--CTGAACGTCAGCCCCGGCATCAGGCCGCGCTTCTTCATCC 501980 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG-CAACA 251976 |||| | || || ||||| || ||||| | | ||||| || | | | | | | | Sbjct 501981 AGAACAGCGCACAGAAGGACCCGGAGAAGAATATGCCCTCCAC-CGCGGCAAAGCCGATC 502039 Query 251977 AGGCGCTCAGCAAACGACTTGTCCTGCGAC--AAGAACTTCTGTGCCCATGCTGCCTTCT 252034 || ||||| || ||||| | || | | || | ||||| ||||||||| Sbjct 502040 AGTCGCTCCTGGAA--GCTTGTACCGCTCCCAATCCACCGCATCGCCCAGTCTGCCTTCT 502097 Query 252035 TTCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | |||| || | ||| || | || || || ||| |||| || Sbjct 502098 TCTGGATGCATGGGACGGTCTGGATCGCGTGCAGCAGTCGCAGCTTCTCCTCG---CTGT 502154 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || ||| || || ||||| | ||| ||| ||||||| |||||| || | | || Sbjct 502155 CCGTGATATACGTGTCCAGCAGCACAGAATACGTCTCCGAGTGGATGTTCTCCATCATCA 502214 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGT--GGAAAAGTTGTT 252209 |||| | | ||||| ||||| || | | || || | ||| | || Sbjct 502215 GCTGGAACCCGTAGAAGGCCCGCGCCTCCGGTACCTTCACATCGTTCATGAACCGCTG-- 502272 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269 || | |||||||| || |||||||||||||| || ||||| |||| | | ||||| Sbjct 502273 CGCCAGATTCTCCATGACGATGCCATCGCTGCCGGCGAAGAATGCAAGCACGTGTTTGAT 502332 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTC-CTGATTCAGAG 252328 |||||| ||||||| || ||||| ||||| |||||| ||||| || || Sbjct 502333 GAAGTGCTGCTCATCCGCGCTGAGC--GTCAC-CCAGTCCTTCATGTCGTTGCCCAAGTC 502389 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCA 252387 || | || ||||||||||||| | | || || ||||||| ||||| | | |||| Sbjct 502390 GATC-TCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCATATATCA 502447 Query 252388 GGGTACTTGATTGGGAA 252404 |||||||||| ||||| Sbjct 502448 TGGTACTTGATGGGGAA 502464 >seq21 Length=1031504 Score = 120 bits (132), Expect = 6e-22 Identities = 236/346 (68%), Gaps = 20/346 (6%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTAT----GATGTGGAGCGTTCTA 218572 ||| || ||||||||||||| ||||||||||| ||| ||| ||||| | Sbjct 762639 TGATTTTGTCGACAAGGAGCTGATTCTTTTCTC----TATTGCCGATTGCGAGCGCAGCA 762694 Query 218573 TTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCA 218632 | || |||| | | || ||| ||||||| ||||| || |||||||| | |||| Sbjct 762695 TCCCGAGCGCGATAGACGGCTTCAAGCCTGGTCAGCGCAAAATCCTCTTCTCGTGCTTCA 762754 Query 218633 AGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTT 218692 |||| ||||| || | || ||||| | ||| || | ||||| || || || | Sbjct 762755 AGCGCAACCTAGTGAACTCCATCAAGGTGGTACAGCTTGCCGGTTACGTCTCGGAGCACT 762814 Query 218693 CTGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCCATTGTAGGCATGGCACAGG 218749 ||| ||||| ||||| |||||| || ||||| | || || | ||||| |||| Sbjct 762815 CTGCGTACCACCACGGGGAGCAGTCTCTCGTGCAG---ACGATCGTTGCAATGGCGCAGG 762871 Query 218750 ACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTC 218806 ||| ||||||||| |||||||| | |||||| | || | |||||||| ||| | | Sbjct 762872 ACTTTGTGGGCAGCAACAACAT---CCCGCTGCTGCGCAAGGATGGTCAGTTCGGTACGC 762928 Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC 218852 |||| ||||| |||||| ||| | | | || |||||||| Sbjct 762929 GTCTGCACGGTGGTAAGGATCACGCTGCGGGACGTTACATCTTTAC 762974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027811001617519